SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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InterPros
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Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene4657

Length: 356 nt

UniGene Fasta

>biog3_v1.0_unigene4657
AATGTCAATTACTTCACAGGAACAATCCCCCTCCAATATGCAAAGAGGGTTTCTGACAGTATCGCCGGCAAGGAGCCTCTGGTTCGATTGTTTCTTGCCGGAAATTTTCTGTTTGGAGAAATTCCGGCCCCGTTTTTGAATTTATCATCAAATGAAGTGAATGTAACATTTGGAGATAACTGCCTGCTGGACTGCCCGGAATCGTTTTTCTTCTGTCAGGGAGGCGATCAGAAGGCCATATCCACTTGCAGGGCTTTCACTCGTCTGCGAATCTGATAGCCAATGGATTTCAAGTCTGAGAAATCCGATATATCTTTTTATCGGAGCATTCTCTGGTTTTAAAAAATGTAAACATT

Ace file of the UniGene biog3_v1.0_unigene4657

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene18488	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	Serine-threonine protein kinase, plant-type, putative n=1 Tax=Ricinus communis RepID=B9R831_RICCO	-	-	51%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	87%
Blast2go	serine-threonine protein plant-	-	-	66%

Source	InterPros	Term	Type	e value	Identity
Sma3	Leucine-rich repeat	IPR001611	-	0.0	-
Sma3	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	0.0	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NV54

Fln msg: your sequence is shorter than subject: 92 - 428

Fln protein: NVNYFTGTIPLQYAKRVSDSIAGKEPLVRLFLAGNFLFGEIPAPFLNLSSNEVNVTFGDNCLLDCPESFFFCQGGDQKAISTCRAFTRLRI*

Protein Length: 93

Fln nts: AATGTCAATTACTTCACAGGAACAATCCCCCTCCAATATGCAAAGAGGGTTTCTGACAGTATCGCCGGCAAGGAGCCTCTGGTTCGATTGTTTCTTGCCGGAAATTTTCTGTTTGGAGAAATTCCGGCCCCGTTTTTGAATTTATCATCAAATGAAGTGAATGTAACATTTGGAGATAACTGCCTGCTGGACTGCCCGGAATCGTTTTTCTTCTGTCAGGGAGGCGATCAGAAGGCCATATCCACTTGCAGGGCTTTCACTCGTCTGCGAATCTGA___TAGCCAATGGATTTCAAGTCTGAGAAATCCGATATATCTTTTTATCGGAGCATTCTCTGGTTTTAAAAAATGTAAACATT

Fln Alignment:

Contig4657___NYFTGTIPLQYAKRVSDSIAGKEPLVRLFLAGNFLFGEIPAPFLNLSSNEVNVTFGDNCLLDCPESFFFCQGGDQKAISTCRAFTRLR
A9NV54_________________NYFTGIIPLQYAKRVSASLAGKEPLVRLFLAGNFLFGEIPTPFMNLSTQEVNVSFGDNCLLDCPKSLFFCQGGDQKAASTCRAFTRLR

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
316		33		66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain