SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene4650

Length: 328 nt

UniGene Fasta

>biog3_v1.0_unigene4650
AAGTCCTTATGTCTCATCAACTCCTCCCCTGACACCACCCTACTCTACCACCCCACCCTCACCATCTACAACCCCATCTACTCCCGCCTATGGATCTTCCCCTCCAACACCAACTACTCCTTCCTATGGCACACCCTCTTCTCCTACAACCCCATCAACACCAGATTACACTCCTCCCTCTACTGGAGGAGCTCCTCTCCCTACTCCATCCACACCTGACTATGGTGTTCCGACCGTTGCTTCCCCTCCACCTGACTATTCTGTGCCTTCCACTCCTGATGGGGCTGGGTCTGTGCCCCCTTTACCTGGTTTATCCCCTCCTGACATT

Ace file of the UniGene biog3_v1.0_unigene4650

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene14428	5/5

Source	Descriptions	Term	Type	e value	Identity
AutoFact	PREDICTED: similar to PDF n=1 Tax=Vitis vinifera RepID=UPI0001984437	-	-	2.0e-29	44%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	81%
Blast2go	protodermal factor	-	-	0.0	55%

Source	GOs	Term	Type	e value	Identity
Blast2go	cell part	GO:0044464	Cellular Component	0.0	55%

Source	InterPros	Term	Type	e value	Identity
Sma3	Aminoacyl-tRNA synthetase, class I, conserved site	IPR001412	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5ADM5

Fln msg: Distance to subject end: 118 aas, your sequence is shorter than subject: 109 - 349

Fln protein: SPYVSSTPPLTPPYSTTPPSPSTTPSTPAYGSSPPTPTTPSYGTPSSPTTPSTPDYTPPSTGGAPLPTPSTPDYGVPTVASPPPDYSVPSTPDGAGSVPPLPGLSPPDI

Protein Length: 110

Fln nts: AAGTCCTTATGTCTCATCAACTCCTCCCCTGACACCACCCTACTCTACCACCCCACCCTCACCATCTACAACCCCATCTACTCCCGCCTATGGATCTTCCCCTCCAACACCAACTACTCCTTCCTATGGCACACCCTCTTCTCCTACAACCCCATCAACACCAGATTACACTCCTCCCTCTACTGGAGGAGCTCCTCTCCCTACTCCATCCACACCTGACTATGGTGTTCCGACCGTTGCTTCCCCTCCACCTGACTATTCTGTGCCTTCCACTCCTGATGGGGCTGGGTCTGTGCCCCCTTTACCTGGTTTATCCCCTCCTGACATT

Fln Alignment:

Contig4650___APLPTPSTPDYGVPTVASPPPDYSVPSTPDGA
D5ADM5_________________APLPSPATPDYGTPTVASPPLDISVPSSPDGA

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
164	83		16		0.994512
248		33		66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain