SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene4634

Length: 514 nt

UniGene Fasta

>biog3_v1.0_unigene4634
CTTCATGGGTTCCTCATTCCTGCCCCGTTTATTCACTTGCATTTGAGGATCCATGGCTTGTCTCTGCATCTGGGGGATGGCAAGCTTGCCATGATGGATGTCAGGAAGCTGCTAAAGTCAAGCAGTAATTTCAAGTCTGAAAAAGCTGCTAATAGTCGTCAGTGTAAGAACACCGCAATTGTATTCTGTAGACATTGGTGCTGAGAGAATTGTATGTGGAGGTGAGGAGGGAGTTCTGCGGATGTGGGACTTCACCCAGGCTTTGGAGATTGAACGCAGAGTGCAGGCCTCAAGGAATGTGCGTTTGGAGAATAGGTCAAGGAGGAAAAAAGCAAATGCAGAAAATGATAGCAAAGCTAAACAGGTGGATCCTTGCTCCATTGCAGCTAAAAGCTGTGAGAGACATGGCGGGGGAAACAGGGTTTGGAAAAGGCGCAATGAGACTGGCAAAGTCCAGGCTTAGATTCAGTTTAAAAGCTACTTGGGGGCAATTTATCCTTTATTAGGTTACATT

Ace file of the UniGene biog3_v1.0_unigene4634

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene10157	5/5

Source	Descriptions	Term	Type	Identity
AutoFact	F-box and wd40 domain protein, putative n=1 Tax=Ricinus communis RepID=B9S6L1_RICCO	-	-	51%
FL-Next	sp=F-box/WD-40 repeat-containing protein At5g21040; Arabidopsis thaliana (Mouse-ear cress).	-	-	78%
Blast2go	at5g21040-like protein	-	-	65%

Source	GOs	Term	Type	e value	Identity
Blast2go	cellular response to phosphate starvation	GO:0016036	Biological Process	0.0	65%
Blast2go	plastid	GO:0009536	Cellular Component	0.0	65%

Source	InterPros	Term	Type	Identity
Sma3	WD40 repeat	IPR001680	-	-
Sma3	F-box domain, cyclin-like	IPR001810	-	-
Sma3	WD40/YVTN repeat-like-containing domain	IPR015943	-	-
Sma3	WD40-repeat-containing domain	IPR017986	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-
Sma3		IPR019782	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: sp_plants

Fln subject: Q94AD8

Fln msg: Overlapping hits, possible frame ERROR between 74 and 73, and possible frame ERROR between 156 and 179, your sequence is shorter than subject: 155 - 539

Fln protein: SWVPHSCPVYSLAFEDPWLVSASxxDGKLAMMDVRKLLKSSSNFKSEKAANxxxxxxxxQLYSVDIGAERIVCGGEEGVLRMWDFTQALEIERRVQASRNVRLENRSRRKKANAENDSKAKQVDPCSIAAKSCERHGGGNRVWKRRNETGKVQA*

Protein Length: 156

Fln nts: CTTCATGGGTTCCTCATTCCTGCCCCGTTTATTCACTTGCATTTGAGGATCCATGGCTTGTCTCTGCATCTxxxxxxGATGGCAAGCTTGCCATGATGGATGTCAGGAAGCTGCTAAAGTCAAGCAGTAATTTCAAGTCTGAAAAAGCTGCTAATxxxxxxxxxxxxxxxxxxxxxxxxCAATTGTATTCTGTAGACATTGGTGCTGAGAGAATTGTATGTGGAGGTGAGGAGGGAGTTCTGCGGATGTGGGACTTCACCCAGGCTTTGGAGATTGAACGCAGAGTGCAGGCCTCAAGGAATGTGCGTTTGGAGAATAGGTCAAGGAGGAAAAAAGCAAATGCAGAAAATGATAGCAAAGCTAAACAGGTGGATCCTTGCTCCATTGCAGCTAAAAGCTGTGAGAGACATGGCGGGGGAAACAGGGTTTGGAAAAGGCGCAATGAGACTGGCAAAGTCCAGGCTTAGATTCAGTTTAAAAGCTACTTGGGGGCAATTTATCCTTTATTAGGTTACATT

Fln Alignment:

Contig4634___WVPHSCPVYSLAFEDPWLVSASxDGKLAMMDVRKLLKSSSNFKSEKAANSxxxxxxxxLYSVDIGAERIVCGGEEGVLRMWDFTQALEIERRVQASRNVRLENRSRRKKANAENDSKAKQVDPCSIAAKSCERHGGGNRVW-KRRNETGKVQA
Q94AD8_________________WMPHTSPVYSLSFEFPWLVSASxDGKLALIDVRKLLKTNRCAYSKRISSSxxxxxxxxLFSVDVGYDRIVCGGEEGTVRIWNFTQALEIERRTRALKGMRHENRMRRRRMQMEMNAKNGRPDQCSIAAHKNPINGERNRAWHSKRRASGKAKA

SNPs (tot: 4)

Position	A %	G %	T %	Probability
187	20		80	0.995493
188	20	80		0.995493
190	80	20		0.995493
191		80	20	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain