SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene4567

Length: 1561 nt

UniGene Fasta

Ace file of the UniGene biog3_v1.0_unigene4567

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene22294	40/44
SustainPine v2.0	sp_v2.0_unigene81761	3/44

Source	Descriptions	Term	Type	Identity
AutoFact	ATP-dependent Clp protease proteolytic subunit n=2 Tax=Picea sitchensis RepID=C0PPS8_PICSI	-	-	82%
FL-Next	sp=ATP-dependent Clp protease proteolytic subunit; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	90%
Blast2go	protease complex subunit 3	-	-	79%

Source	GOs	Term	Type	Identity
Blast2go	chloroplast envelope	GO:0009941	Cellular Component	79%
Blast2go	chloroplast stroma	GO:0009570	Cellular Component	79%
Blast2go	thylakoid	GO:0009579	Cellular Component	79%
Blast2go	mitochondrion	GO:0005739	Cellular Component	79%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: C0PPS8

Fln msg:

Fln protein: MECCTTRRSPLVSSFVCPSPKWTSRRTTRPRDRVSMALPFPPRMPNDPFLSKQAFTASAPQTKPHSDDTPPLLDLMADITPRLMAGPAQVERASYNEHRPRRPPPDLPSLLLNSRIVFIGMPLVPAVTELVIAEFLYLQWLDPSKPTYVYINSTGTSREDGETVALETEGFAIYDTMMQMKNEIHTVAFGAAVGQACLLLAAGKKGKRFMLPHAQVMLQQPRLPPTGQMPAIDVHIRAKELIHNRDTFVKLLALHTGNSFETVAKAMERPLYMFPREAVKFGVADKILWEGQEAIGDTLSPEEWDKRAGIKLVERPVSYGAGSGGLG*

Protein Length: 329

Fln nts: GCCATTCACTCAGAGTAGCCAAACCCACTGAAACG_-_ATGGAGTGCTGCACCACCAGGCGCTCTCCTCTGGTTTCTTCTTTCGTGTGCCCATCTCCTAAATGGACGTCCAGAAGGACAACAAGGCCTAGGGATCGAGTCTCGATGGCACTACCGTTCCCTCCGCGCATGCCCAATGATCCTTTCCTCTCCAAACAAGCATTCACAGCCTCCGCTCCTCAAACAAAACCCCACTCGGACGACACGCCTCCGCTCCTCGACCTGATGGCCGATATTACGCCCAGGCTAATGGCAGGACCAGCTCAGGTTGAACGTGCGTCTTACAACGAGCACAGGCCCAGAAGGCCTCCGCCAGACCTGCCTTCATTACTTCTCAACAGTCGAATTGTCTTCATAGGCATGCCTTTGGTTCCAGCTGTCACAGAGCTTGTTATAGCGGAGTTTCTTTATTTGCAATGGTTGGATCCAAGTAAGCCGACTTATGTGTACATCAACTCAACTGGAACATCACGTGAGGATGGCGAGACGGTTGCCTTGGAAACTGAAGGTTTTGCCATTTATGATACAATGATGCAGATGAAAAATGAGATCCACACAGTGGCATTTGGAGCAGCTGTTGGCCAGGCTTGCTTGCTGTTGGCTGCAGGAAAGAAGGGGAAGCGGTTTATGTTGCCTCATGCTCAAGTTATGCTTCAACAGCCACGTTTACCACCAACTGGGCAAATGCCAGCAATTGATGTTCACATTAGAGCTAAGGAGCTTATACATAACAGAGATACATTTGTAAAGCTTCTTGCTCTGCACACTGGAAATTCGTTTGAGACAGTTGCAAAGGCTATGGAGAGACCCTTGTACATGTTTCCCAGGGAAGCTGTGAAATTTGGAGTGGCCGACAAGATTCTATGGGAAGGCCAGGAAGCTATAGGAGATACCCTTTCACCAGAGGAGTGGGACAAGAGAGCCGGCATTAAACTTGTCGAACGGCCTGTGAGTTATGGTGCAGGAAGTGGTGGTTTGGGTTGA___TTTTTGTGTGCAGTCGGTTGTAACATGTTGCAGTATATCAATATGTATGTCCCCAAGATTAGCTCAAGGCTTCGAGACTCTTATGCAGTTATTACACATGCCGTGAGGAAATTGTATTGCATATAAAGCTGAAATTGGTGACCCATCAGTTAGTTGTAATGGAATTTTTGTAAGTTACATATATTTGGCTGGTCATCGCTTGGAAGTTTTAGTGCCAATAACGATTTATCTGCTATTTTATATTGTTTTCTTGATAAGCATCGGACTGGTACGTTGGATCAACGGTTTGTGAAGCATTAATTACGAGGTACAATGTGCCGTCTCGTTTTATAGTTTGAAGCCTCTGAAGGCTTTGAGCCGTGTTTCAACTATATGCCCTAGTTTGAAGTCTTTCAATGTTACTTGTTTCGATGGTAGTCCTTCAAATTTCTTTGACTGAATTTCCACATGTTAATCATTTACATGGTTTATTTCAGATTAATTCATCTAGATGTATATTGTCTTCTTGAAAATGGTCTTTGAATCATCAAAGAAACAACATT

Fln Alignment:

Contig4567___MECCTTRRSPLVSSFVCPSPKWTSRRTTRPRDRVSMALPFPPRMPNDPFLSKQAFTASAPQTKPHSDDTPPLLDLMADITPRLMAGPAQVERASYNEHXXXXXXXXXXXXXXXXXIVFIGMPLVPAVTELVIAEFLYLQWLDPSKPTYVYINSTGTSREDGETVALETEGFAIYDTMMQMKNEIHTVAFGAAVGQACLLLAAGKKGKRFMLPHAQVMLQQPRLPPTGQMPAIDVHIRAKELIHNRDTFVKLLALHTGNSFETVAKAMERPLYMFPREAVKFGVADKILWEGQEAIGDTLSPEEWDKRAGIKLVERPVSYGAGSGGLG
C0PPS8_________________MECCSTRRSPLVSSFVCPSPKWTPRMITRSRDRVSMAIPLPPRNPNDPFLSNLAFTASGSQAKPRSDDTPPLLDLVANITPRLMAGPAQVERASYNEHRPRRPPPDLPSLLLNSRIIFIGMPLVPAVTELVIAEFLYLQWLDPRQPTYVYINSTGTSREDGETVALETEGFAIYDTMMQMKNEIHTVAFGAAVGQACLLLAAGKKGKRYMLPHAQVLLQQPRLPATGQMPAIDVHIRAKELIHNRDTFVKLLAKHTGNPFETVAKAMERPFYMFPRQAVEFGVADKILWQGQEAIGDTPSPDEWDKRAGIKLVERPVAYGAGSGGLG

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain