SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene4561

Length: 1851 nt

UniGene Fasta

Ace file of the UniGene biog3_v1.0_unigene4561

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene18583	190/190

Source	Descriptions	Term	Type	Identity
AutoFact	serinc-domain containing protein [Arabidopsis thaliana] ref\|NP_001185008.1\| serinc-domain containing protein [Arabidopsis thaliana] gb\|AAF18512.1\|AC010924_25 Contains similarity to gb\|AF181686 membrane protein TMS1d from Drosophila melanogaster. ESTs gb\|R	-	-	57%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	95%
Blast2go	membrane protein	-	-	83%

Source	InterPros	Term	Type	e value	Identity
Sma3	TMS membrane protein/tumour differentially expressed protein	IPR005016	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LQ32

Fln msg:

Fln protein: MWAASCLASCCATCACEACKSVAGGISRRSARIAYCGIFALSLIVAWIFREIAPPLMEKIPWINYFADTPSREWFQTEAVLRVSLGSFLFFAIFALLMIGVKDQRDARDSWHHGGWMAKIMIWCTLVILMFFVPHGFVGVYETLSKFGSGLFLLIQVVLLLDFTHTWNNAWVSKDEQFWYIALLVVSLVCYIATFLFSGLLFHWFNPSGYECNLNTFFIVVTLSLAFVFAVVALHPKVNGSLLPASVISVYCTYLCYSGLSSEPRDYECNGLHGHVKAVSTSTLLLGMLTTVLSVVYSAVRAGSSTALLSPPSSPRAGSGKPLLSFDEIEEGHKNAQKDEERPVTYSYTFFHVIFALASMYSAMLLTGWTSSTPDGEKLIGVGWHTVWVRICTEWITAALYIWSLVAPLLFPDREFF*

Protein Length: 419

Fln nts: TTTAAGCGGTGTGAGTCCTACATGGGACCCATCGGAAGCTCATAGGGCCTTATAGAAACGCAGGCTCTATATAAGAAAATCTTTAGCTTCATTCGGCGATAGGAATTCCGTTCGGTAGAGGAATTTGGCGATTATAATTTCAGGATATAGTATCAGTTATAACTTACATTACTTGTAAAGAAGTTGAAAATC_-_ATGTGGGCAGCATCATGCCTTGCTTCATGTTGTGCCACGTGTGCATGTGAGGCATGCAAGTCAGTGGCTGGAGGGATTTCCCGACGATCTGCGCGCATTGCATATTGTGGTATCTTTGCATTATCTTTAATTGTTGCATGGATCTTCAGAGAGATTGCTCCACCGCTTATGGAAAAAATTCCCTGGATTAATTATTTCGCTGACACTCCTAGCAGAGAATGGTTTCAAACAGAGGCTGTTCTACGTGTCAGTCTGGGCAGTTTCTTGTTTTTTGCAATATTTGCACTTCTCATGATTGGAGTTAAGGACCAACGAGATGCCCGAGACAGTTGGCACCATGGTGGATGGATGGCAAAGATCATGATTTGGTGTACTCTAGTAATATTGATGTTTTTTGTTCCCCATGGTTTTGTTGGTGTTTATGAGACACTATCAAAATTTGGTTCTGGATTGTTTTTGCTTATTCAAGTGGTTTTACTGCTGGACTTCACTCATACATGGAATAATGCTTGGGTTTCAAAGGATGAACAATTCTGGTATATAGCATTGCTTGTTGTGTCACTTGTCTGTTACATTGCAACATTTTTATTCTCAGGATTGCTCTTCCACTGGTTCAATCCTTCAGGCTATGAATGTAATCTCAATACATTCTTTATTGTGGTAACATTAAGTCTGGCATTTGTATTTGCAGTCGTTGCTTTGCATCCTAAGGTCAATGGAAGCCTTTTGCCAGCTTCAGTAATCTCAGTGTACTGCACATACTTGTGTTACAGTGGACTTTCAAGTGAACCAAGGGACTATGAATGCAATGGTCTCCATGGTCATGTGAAAGCTGTATCTACCAGCACTCTCTTACTTGGAATGCTTACAACAGTTCTCTCGGTGGTGTATTCTGCAGTTCGAGCTGGTTCTTCAACTGCATTACTTTCACCTCCATCGTCACCAAGGGCAGGTTCTGGGAAGCCTTTGCTCTCATTTGATGAGATTGAGGAAGGACACAAAAATGCACAAAAAGATGAAGAACGGCCTGTCACATATTCGTACACTTTTTTCCATGTTATTTTTGCCCTCGCCAGCATGTATTCAGCTATGCTTCTAACTGGCTGGACAAGTTCAACACCAGATGGTGAAAAACTCATTGGTGTTGGTTGGCATACTGTCTGGGTGCGGATCTGCACAGAGTGGATTACAGCAGCACTGTACATTTGGTCTCTGGTTGCTCCTCTCTTATTTCCCGACAGGGAGTTCTTCTGA___AGCTTTAACAGAACGCTGTTAAAGCTTTGGTTGCACAAGTCATAACACAAGAACATGAAGCTTACAGATGGCAAGATCTACAGAAGAAATACCGAAATATGTTGTCTAGATTTCAAAACGGAGCTTGCATTATCTAATTCGTATTTTAAACCTATTCGACTTAAGAAGGTTTTTAGAGTGGTTGCATAATACATATCACATACCTTTACCTGATATATATATGTTTTGTATGCTAGAATTCTCAAAACAAGTCACTTTGGATGTGTTCTATCCAGAATGTTTCTCTAGTGTAATTGTCCTTTTCATAAACGCTAATAAGTTATGCCATTGTTATGATGTGATTTTTGATTAATTTCCTTGCTTCTTGTTAAGCATGAGGCCTAGAGATTAAAAGATTTTGACATT

Fln Alignment:

Contig4561___VAGGISRRSARIAYCGIFALSLIVAWIFREIAPPLMEKIPWINYFADTPSREWFQTEAVLRVXXXXXXXXXXXXXXXXXVKDQRDARDSWHHGGWMAKIMIWCTLVILMFFVPHGFVGVYETLSKFGSGXXXXXXXXXXXDFTHTWNNAWVSKDEQFWYIALLVVSLVCYIATFLFSGLLFHWFNPSGYECNLNTFFIVVTLSLAFVFAVVALHPKVNGSLLPASVISVYCTYLCYSGLSSEPRDYECNGLHGHVKAXXXXXXXXXXXXXXXXXXYSAVRXXXXXXXXXXXXXXXXXXXKPLLSFDEIEEGHKNAQKDEERPVTYSYTFFHVIFALASMYSAMLLTGWTSSTPDGEKLIGVGWHTVWVRICTEWITAALYIWSLVAPLLFPDREFF
B8LQ32_________________VAGGISRRSARIAYCGLFALSLFVAWIFREIAPPLMEKIPWINYFAETPSREWFQTDAVLRVSLGSFLFFAVFALIMIGVKDQRDARDSWHHGGWMAKIMTWCTLVVLMFFVPNGLIGIYETLSKFGSGLFLLIQVVLLLDFTHTWNNAWVSKDEQFWYIALLVVSLVCYIGTFAFSGLLFHWFNPSGYDCNLNTFFIVVTLSLAFVFAVVALHPKVNGSLLPASVISVYCTYLCYSGLSSEPRDYECNGLHGHVKAVSTSTLLLGMITTVLSVVYSAVRAGSSTALLSPPSSPRAGSGKPLLSFDEIEEGHKNTQKDEERPVTYSYSFFHVIFALASMYSAMLLTGWTSSTADGEKLIGVGWHTVWVRICTEWITAALYIWSLVAPLLFPDREFF

SNPs (tot: 6)

Position	A %	C %	G %	T %	Probability
1628	25		75		0.996473
1629	25			75	0.996473
1633	75			25	0.996473
1657		60	40		1.0
1782		16	83		0.994512
1829		66	33		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain