SustainPineDB

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Assembly info
Unigenes
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SSRs
Descriptions
GOs
ECs
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Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene4535

Length: 439 nt

UniGene Fasta

>biog3_v1.0_unigene4535
AATGTCTGTTCCAACACCCAGCGGACGCCGAAGCCTTATGAAACTTGCAGAACGTATGACAAATAAGTTTTGTAGTGGAGTGAGTGCATCGAGTAGGCATACATGGACTAAGCTATCTCAGGGAACTGGCGACGATGATGTCCGGGTGATGTCAAGAAAGAACGTGGACGATCCTGGAGAGCCTCCCGGAGTAGTTCTGAGTGCAGCAACATCTCTCTGGCTTCCAGTTTCTCCAACCCGCTTATTTGACTTCTTAAGAGACCAGAGTTTTAGAAACGAGTGGGATATACTGTCCAATGGAGGCCCAATAGAAGAAGTAACTCACATATCAAACGGAAAGGATCGTGGCAACAGGGTTTCTGTTCTTAGCGCCAAAAACTCTAGTCAGAGCAACACGTTGATCTTGCAAGAGAGCTGTGCAGACACGTACGGATCGATG

Ace file of the UniGene biog3_v1.0_unigene4535

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene240	3/3

Source	Descriptions	Term	Type	Identity
AutoFact	TPA_inf: class IV HD-Zip protein HDZ41 [Physcomitrella patens]	-	-	57%
FL-Next	tr=Homeobox 1; Picea abies (Norway spruce) (Picea excelsa).	-	-	66%
Blast2go	homeodomain protein	-	-	72%

Source	GOs	Term	Type	e value	Identity
Blast2go	transcription, DNA-dependent	GO:0006351	Biological Process	0.0	72%
Blast2go	DNA binding	GO:0003677	Molecular Function	0.0	72%

Source	InterPros	Term	Type	Identity
Sma3	Helix-turn-helix motif	IPR000047	-	-
Sma3	Homeodomain	IPR001356	-	-
Sma3	Lipid-binding START	IPR002913	-	-
Sma3		IPR012287	-	-
Sma3	Homeobox, conserved site	IPR017970	-	-
Sma3	Tubulin, conserved site	IPR017975	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: Q9FR59

Fln msg: Distance to subject end: 101 aas, your sequence is shorter than subject: 146 - 763

Fln protein: MSVPTPSGRRSLMKLAERMTNKFCSGVSASSRHTWTKLSQGTGDDDVRVMSRKNVDDPGEPPGVVLSAATSLWLPVSPTRLFDFLRDQSFRNEWDILSNGGPIEEVTHISNGKDRGNRVSVLSAKNSSQSNTLILQESCADTYGSM

Protein Length: 147

Fln nts: AATGTCTGTTCCAACACCCAGCGGACGCCGAAGCCTTATGAAACTTGCAGAACGTATGACAAATAAGTTTTGTAGTGGAGTGAGTGCATCGAGTAGGCATACATGGACTAAGCTATCTCAGGGAACTGGCGACGATGATGTCCGGGTGATGTCAAGAAAGAACGTGGACGATCCTGGAGAGCCTCCCGGAGTAGTTCTGAGTGCAGCAACATCTCTCTGGCTTCCAGTTTCTCCAACCCGCTTATTTGACTTCTTAAGAGACCAGAGTTTTAGAAACGAGTGGGATATACTGTCCAATGGAGGCCCAATAGAAGAAGTAACTCACATATCAAACGGAAAGGATCGTGGCAACAGGGTTTCTGTTCTTAGCGCCAAAAACTCTAGTCAGAGCAACACGTTGATCTTGCAAGAGAGCTGTGCAGACACGTACGGATCGATG

Fln Alignment:

Contig4535___VPTPSGRRSLMKLAERMTNKFCSGVSASSRHTWTKLSQGTGDDDVRVMSRKNVDDPGEPPGVVLSAATSLWLPVSPTRLFDFLRDQSFRNEWDILSNGGPIEEVTHISNGKDRGNRVSVL--SAKNSSQSNTLILQESCADTYGS
Q9FR59_________________IPSPEGRKSILKLAERMVTSFCAGVSASTAHTWTTLS-GSGAEDVRVMTRKSIDDPGRPPGIILSAATSLWLPVPPKKVFDFLRDENSRNEWDILSNGGLVQEVDHIANGQDPGNCVSLLRVNTVNSNQSNMLILQESCTDASGS

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain