SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene4501

Length: 1503 nt

UniGene Fasta

Ace file of the UniGene biog3_v1.0_unigene4501

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene391	16/18

Source	Descriptions	Term	Type	Identity
AutoFact	3-ketoacyl-ACP synthase [Cuphea avigera var. pulcherrima]	-	-	62%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	100%
Blast2go	beta-ketoacyl-acp synthase ii	-	-	82%

Source	ECs	Term	Type	e value	Identity
Blast2go	Beta-ketoacyl-acyl-carrier-protein synthase I.	EC:2.3.1.41	-	0.0	82%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Fatty acid biosynthesis	00061		0.0	82%
Blast2go	Metabolic pathways	01100		0.0	82%

Source	GOs	Term	Type	Identity
Blast2go	embryo development ending in seed dormancy	GO:0009793	Biological Process	82%
Blast2go	cold acclimation	GO:0009631	Biological Process	82%
Blast2go	unsaturated fatty acid biosynthetic process	GO:0006636	Biological Process	82%
Blast2go	3-oxoacyl-[acyl-carrier-protein] synthase activity	GO:0004315	Molecular Function	82%
Blast2go	chloroplast	GO:0009507	Cellular Component	82%

Source	InterPros	Term	Type	Identity
Sma3	Ribosomal protein L19/L19e	IPR000196	-	-
Sma3	Beta-ketoacyl synthase	IPR000794	-	-
Sma3	Immunoglobulin/major histocompatibility complex, conserved site	IPR003006	-	-
Sma3	Beta-ketoacyl synthase, N-terminal	IPR014030	-	-
Sma3	Beta-ketoacyl synthase, C-terminal	IPR014031	-	-
Sma3	Ribosomal protein L19/L19e, domain 1	IPR015972	-	-
Sma3	Thiolase-like, subgroup	IPR016038	-	-
Sma3	3-oxoacyl-[acyl-carrier-protein] synthase 2	IPR017568	-	-
Sma3	Beta-ketoacyl synthase, active site	IPR018201	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: D5AD41

Fln msg: Overlapping hits, possible frame ERROR between 1262 and 1259, Distance to subject end: 168 aas, your sequence is shorter than subject: 181 - 289

Fln protein: MDKFMLYLLTAGKKAVADGGMNEDVLKELDKAKCGVVIGSALGGMKVFNDAVEALRISYRKMNPFCVPFATTNMGSAMMAMDLGWMGPNYSISTACATSxxxIISAANHILRGEADVMLSGGSDAAIIPIGVGGFVACRALSQRNEDPTKASRPWDVDRDGFVMGEGAGALLLEELEHAKT

Protein Length: 182

Fln nts: GGAAACTCTGCTCAAGAGCTTTAAAGGCCGCGGATTGTGTTGGCTTAAGCGTAGAGGAGTGTTTCTGTTAGATGCGCATGCTGAAGAGGCATCGATTTAGCTCTCGATCGGCTAATTTCCTAGGAGGGTACAGTTTATACCATTCATGTTTTGAGGACACAATTTGACTGTCTGGAACTTGGCAACAAATCAAAAGAAATAAATTGTGAGACGCACTTAATGGTTGAAATTGCTATGCTGGCAAGAAGGTTAGGTTGAGGAGGAATAAAATATCAAGGTTTCTGATACTCTGTCACGCAGTGGTTAATCTTTAGCAAACATGGCCGCGGTTGCTCCTTTGTACAGTTGGCTTATTGCCGCATGTGTCTCTAGAACTGTATTGGGAGCTGCAGGTGATGACTCAAATGCCTCATCTTTTCCGATGGGGAGGAGAGCTAGAAGGCGTTTTGCCCGCTCCAAACCATTGTCAACAGGTTACTTGTATCCTCTACTTTGTAAGGATCATGCTGCAGCAGGAGGAAGTTTGGTTGCCTTATGTGGTTCAGGCCTTCAGGGTTTAGGTTCGTGCTTCTCATTTGAAGCATGCCCTGAGTACAGTAGTTTAAAAGGATCTCAGTTTTTTCCCGACAACTTATTTGGATCAAGGCCTATTAAGATGCGTCGAAGACAGCGAAGATTAACCTCTACAGGCAAAGCAATGGCCATTGCTCTGCAACCTGTGAAGGCTGTACAAGAGAAAACTAAAATTGCTACTAAGCCGAGGAGGGTAGTTGTGACTGGAATGGGAGTGGTCACTTCTCTTGGTCATGATCCAGATACTTTCTACGGGAATCTTCTTCAGGGACAGAGTGGTATCAGTGAAATTGAGAGCTTTGATTGCTCGGACTTTCCAACTAGAATAGCTGGTGAAATAAAGTCATTTCAACAGATGGTTGGGTTGCACCAAAGTTTCAAGGCGC_-_ATGGATAAATTCATGCTTTACTTGCTTACTGCTGGAAAAAAGGCAGTAGCAGATGGTGGAATGAATGAAGATGTCCTCAAAGAATTAGACAAAGCAAAGTGTGGGGTTGTAATTGGTTCTGCATTAGGTGGAATGAAGGTTTTCAATGATGCAGTAGAAGCGTTGAGGATTTCTTACAGGAAAATGAACCCATTCTGTGTACCATTTGCAACAACAAATATGGGATCAGCAATGATGGCCATGGATTTGGGATGGATGGGTCCAAACTATTCCATATCCACTGCTTGTGCTACAAGCxxxxxxxxxATCATAAGTGCTGCAAATCATATTTTGCGGGGTGAAGCTGATGTCATGCTCTCTGGTGGCTCTGATGCTGCAATTATTCCAATTGGTGTGGGAGGATTTGTAGCTTGCAGAGCATTATCACAAAGAAATGAAGATCCTACAAAAGCATCTCGTCCCTGGGATGTGGATCGTGATGGATTTGTTATGGGAGAGGGAGCAGGAGCTCTTCTTCTAGAAGAATTAGAACATGCAAAGACATT

Fln Alignment:

Contig4501___MNPFCVPFATTNMGSAMMAMDLGWMGPNYSISTACATSNxCIISAANHILRGEADVMLSGGSDAAIIPIGVGGFVACRALSQRNEDPTKASRPWDVDRDGFVMXXXXXXXXXXXXXHAK
D5AD41_________________MNPFCVPFATTNMGSAMMAMDLGWMGPNYSISTACATSNxCIISAANHIVRGEADVMLSGGSDAAIIPIGVGGFVACRALSQRNEDPTKASRPWDVDRDGFVMGEGAGVLLLEELEHAK

SNPs (tot: 12)

Position	A %	C %	G %	T %	Probability
885	14		85		0.993533
887		85		14	0.993533
901		20		80	0.995493
903			80	20	0.995493
904		80		20	0.995493
917	33		66		0.997452
970	33	33		33	0.997753
971	66		33		0.997452
1124	25		75		0.996473
1125	25			75	0.996473
1128	75			25	0.996473
1332	33			66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain