SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene4454

Length: 412 nt

UniGene Fasta

>biog3_v1.0_unigene4454
CTTTGTCAAATGGAATGGTGCAGTCTTTCATTGATGCATGTACTTTGACTCCAACAGACATGAGCAAGCCAAAGCTTGCAGCAGAAATTGTCAAGGGAACTTCGTAAGTTCCATGAAATGGAAATTCCAGGTTCCAAGGATCCACAACTATGGTCAGATATCTTCAAATTCCTTGATAAAGCTTCCAGTCTTAGATTTGAGGATGCTGCAAAGCAGGCAAAATATACATCAATATCATTTGACGAACTCAGAGAAGAAGCAATGTCTCTGAAGGTGTTCACTGATTGTTTAAATGCTCCTATAGTGTTTGCACACAATGATCTTCTCTCAGGGAATTTGATGCTAAGTGAAAAAGAAGAGAAGCTTTACTTGATTGACTTCGAGTATGGATCCTATAATTTTCGAGGATATG

Ace file of the UniGene biog3_v1.0_unigene4454

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene367	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	protein kinase-like protein [Arabidopsis thaliana] gb\|AAC32242.1\| putative choline kinase [Arabidopsis thaliana] dbj\|BAF01284.1\| choline kinase like protein [Arabidopsis thaliana] gb\|AEC07895.1\| protein kinase-like protein [Arabidopsis thaliana]	-	-	61%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	32%
Blast2go	choline ethanolamine kinase	-	-	79%

Source	ECs	Term	Type	e value	Identity
Blast2go	Ethanolamine kinase.	EC:2.7.1.82	-	0.0	79%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Glycerophospholipid metabolism	00564		0.0	79%
Blast2go	Metabolic pathways	01100		0.0	79%

Source	GOs	Term	Type	Identity
Blast2go	embryo development ending in seed dormancy	GO:0009793	Biological Process	79%
Blast2go	phosphorylation	GO:0016310	Biological Process	79%
Blast2go	ethanolamine kinase activity	GO:0004305	Molecular Function	79%

Source	InterPros	Term	Type	e value	Identity
Sma3	Choline/ethanolamine kinase	IPR002573	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LLC2

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 107 aas, your sequence is shorter than subject: 137 - 351

Fln protein: LCQMEWCSLSLMHVL*LQQT*ASQSLQQKLSRELRKFHEMEIPGSKDPQLWSDIFKFLDKASSLRFEDAAKQAKYTSISFDELREEAMSLKVFTDCLNAPIVFAHNDLLSGNLMLSEKEEKLYLIDFEYGSYNFRGY

Protein Length: 138

Fln nts: CTTTGTCAAATGGAATGGTGCAGTCTTTCATTGATGCATGTACTTTGACTCCAACAGACATGAGCAAGCCAAAGCTTGCAGCAGAAATTGTCAAGGGAACTTCGTAAGTTCCATGAAATGGAAATTCCAGGTTCCAAGGATCCACAACTATGGTCAGATATCTTCAAATTCCTTGATAAAGCTTCCAGTCTTAGATTTGAGGATGCTGCAAAGCAGGCAAAATATACATCAATATCATTTGACGAACTCAGAGAAGAAGCAATGTCTCTGAAGGTGTTCACTGATTGTTTAAATGCTCCTATAGTGTTTGCACACAATGATCTTCTCTCAGGGAATTTGATGCTAAGTGAAAAAGAAGAGAAGCTTTACTTGATTGACTTCGAGTATGGATCCTATAATTTTCGAGGATATG

Fln Alignment:

Contig4454___ELRKFHEMEIPGSKDPQLWSDIFKFLDKASSLRFEDAAKQAKYTSISFDELREEAMSLKVFTDCLNAPIVFAHNDLLSGNLMLSEKEEKLYLIDFEYGSYN
B8LLC2_________________KLREFHQLDVPGPRKPKLWTRLRDWVKTALAV-----CPKIEAAEFQLDCMEEEVDNLEKLLSREDETIGFCHNDLQYGNIMLHEEDKSLTIIDYEYSSYN

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
100		66		33	0.997452
101			33	66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain