SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene4453

Length: 1124 nt

UniGene Fasta

Ace file of the UniGene biog3_v1.0_unigene4453

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene20876	40/40

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Acetyl-CoA carboxylase BCCP subunit n=1 Tax=Jatropha curcas RepID=F2WMV5_9ROSI	-	-	2.00386e-43	46%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	87%
Blast2go	biotin carboxylase carrier protein	-	-	0.0	67%

Source	InterPros	Term	Type	Identity
Sma3	Acetyl-CoA biotin carboxyl carrier	IPR001249	-	-
Sma3	Biotin-binding site	IPR001882	-	-
Sma3	Biotin/lipoyl attachment	IPR000089	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9P0L3

Fln msg: your sequence is shorter than subject: 280 - 309

Fln protein: ASQQHHVRVSNARARSRGSVLASSFSGTHLDRPFAGQFERYRGSRSALWKSTVNEVAVHGSSNAAAIPAAQSLEVKAAGDNGDKPAEESSASSSAPSTMTGSAISAFMSEVADLIKLVDSRDIMELQLKQQDCEILIRKKEALPQPPAPSPPVMVHSLYPPAPAPPPSPAVATDRPTYDLVPAGPSTPTQPQAPAKPDQSGQASFKCPMAGTFYRSPGPGQPHFVKVGDKVQKGQVICIVEAMKLMNEIEADRSGTIVEILVEDGKPVAIDMPLFVIKT*

Protein Length: 281

Fln nts: GGCCAGTCAGCAGCATCACGTTAGGGTTTCAAATGCCAGGGCCCGCTCACGGGGTTCGGTCTTGGCTTCGAGCTTCTCGGGAACTCACCTCGATCGGCCTTTTGCTGGACAGTTCGAGCGATATCGGGGTTCTCGGTCAGCTTTGTGGAAGTCAACTGTGAACGAGGTTGCAGTCCATGGATCCTCTAATGCTGCAGCAATTCCTGCTGCTCAAAGTTTGGAAGTCAAAGCGGCTGGGGACAATGGGGACAAGCCTGCTGAGGAGTCTTCAGCTTCATCTTCAGCGCCTTCCACAATGACGGGTTCGGCTATTTCTGCATTTATGAGTGAAGTCGCTGATTTGATCAAGCTTGTGGATTCTCGGGATATTATGGAATTGCAGCTGAAACAACAGGATTGTGAAATTCTAATTAGGAAAAAGGAGGCATTGCCTCAGCCTCCTGCTCCATCTCCACCTGTAATGGTACATTCCCTTTACCCGCCAGCCCCAGCTCCACCACCATCACCAGCTGTTGCAACTGATCGACCGACATATGACCTTGTTCCTGCTGGTCCTTCGACTCCTACCCAACCTCAGGCTCCTGCAAAGCCAGATCAATCAGGGCAAGCAAGTTTTAAATGCCCTATGGCAGGAACTTTCTACCGCAGTCCTGGCCCTGGTCAACCGCATTTTGTTAAGGTTGGAGATAAAGTCCAGAAAGGGCAGGTGATTTGCATTGTTGAAGCCATGAAACTGATGAATGAAATTGAGGCTGACCGATCAGGAACAATTGTTGAAATTCTTGTTGAGGACGGCAAGCCAGTTGCTATTGACATGCCTCTCTTCGTGATCAAGACATGA___ATCTGGAGACTTTGAACATCAAAGTTGCAGGTAGACAAAATGTCATGTGGATATTTGGTTTGCTCCTTTCTTATAAAGGGGTTATAAGGTGCAGCATGCCTGGATAATGTGTTTTACACATTGGATTAGTTGGTTTGATATATAACATGGGAAGCTGTGTACCGGATTCTTTTTGTATGGTTTTGCATCTACAATTTTCAGCGCCCACTCTGAAATTATAGTAAAGGCCTACAAATTGAAAGAACTCTTTTTGCTTTACTTTAGGGACGTAATAGTTCAATTG

Fln Alignment:

Contig4453___SQQHHVRVSNARARSRGSVLASSFSGTHLDRPFAGQFERYRGSRSALWKSTVNE-VAVHGSSNAAAIPAAQSLEVKAAGDNGDKXXXXXXXXXXXXXTMTGSAISAFMSEVADLIKLVDSRDIMELQLKQQDCEILIRKKEALXXXXXXXXXVMVHSLYXXXXXXXXXXXXXTDRPTYDLVPAGPSTPTQPQAPAKPDQSGQASFKCPMAGTFYRSPGPGQPHFXXXXXXXXXXXXICIVEAMKLMNEIEADRSGTIVEILVEDGKPVAIDMPLFVIK
A9P0L3_________________SQQHQVRVSNPRARSRGSVLASSFSGSRLDRPFAGQLEGLRGSRPALWKSPVNEQVAVHGFSNAAAVPAAESLEVKSAEDNGDKLAEESASSSSSPSIMAGSAISAFMSEVTDLIKLVDSRDIMELQLKQQDYEILIRKKEALPPPPSPSPPVMVHSLYPPAPAPLPSPAVAPNRPTYDLVPAGPSTPTQPEAPAKPEQSGHPSFKCPMAGTFYRSPGPGQPSFVKVGDKVQKGQVICIVEAMKLMNEIEADRSGTIVEILVEDGKPVAVDMPLFVIK

SNPs (tot: 25)

Position	A %	C %	G %	T %	Probability
366	14		85		0.993533
369	85		14		0.993533
407			12	87	0.992554
408		87		12	0.992554
482	10		90		0.90298
483		90		10	0.90298
484		90		10	0.90298
638	10			90	0.90298
680		11	88		0.923564
681	11		88		0.923564
695	14	85			0.993533
698			85	14	0.993533
699	85			14	0.993533
734	87		12		0.992554
735		87		12	0.992554
785		11		88	0.923564
786	11	11	77		0.968132
861	10			90	0.90298
864	90			10	0.90298
865	90			10	0.90298
921	16		83		0.994512
922		16	83		0.994512
923	16		83		0.994512
965	25		75		0.996473
966		25	75		0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain