SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene4442

Length: 1803 nt

UniGene Fasta

Ace file of the UniGene biog3_v1.0_unigene4442

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene2324	43/44

Source	Descriptions	Term	Type	Identity
AutoFact	THO complex subunit 1 [Arabidopsis thaliana] gb\|AAL11560.1\|AF424566_1 AT5g09860/MYH9_7 [Arabidopsis thaliana] gb\|AAL16253.1\|AF428323_1 AT5g09860/MYH9_7 [Arabidopsis thaliana] gb\|AED91456.1\| THO complex subunit 1 [Arabidopsis thaliana]	-	-	64%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	70%
Blast2go	tho complex subunit 1-like	-	-	78%

Source	GOs	Term	Type	e value	Identity
Blast2go	production of ta-siRNAs involved in RNA interference	GO:0010267	Biological Process	0.0	78%
Blast2go	plastid	GO:0009536	Cellular Component	0.0	78%

Source	InterPros	Term	Type	Identity
Sma3	Reverse transcriptase	IPR000477	-	-
Sma3	Sulfotransferase domain	IPR000863	-	-
Sma3		IPR015706	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: tr_plants

Fln subject: F6HVB5

Fln msg: your sequence is shorter than subject: 517 - 601

Fln protein: GYIESKQDILGKQELFGRGKLVMLRTCNQLLRRLSKANDVIFCGRILMFLAHFFPLSERSAVNIKGIFNTSNETKYKKEHPPDGVSIDFNFYKTFWSLQEYFCNPAPMIHTLTKWQNFIASLAIVLDTFEAQPLGDDDANASDLDEGEAAAFSIKYLTSSKLMSLELKDPSFRRHVLVQCLIIFDYFKFPGKGDKDGPKESMREEIKAYEERVKKHLEMTPPKGREFLSSIEHILEREKNWVWWKRDGCLPFEKQVSERKTTQDGVKKRRPRWRLGNKELAQLWKWSDQNPNALTDAQRVKMPSVTDYWKALADDLDPSAGIEPEYHHRNNRVYCWKGLRFSARQDLEGFSRFTEHGIEGVVPPELLQPEIRNKYHGKTSEKSRRTAKKEEETKGAVTQTEENQANGKVAELDDGGPNQEIEDAPTPVDVDALGTSTQSGAPTPDESQKQSSDMEAGQEGLHSEGGNSPDPNSADMEEGLMKDSSPQDNSVLSNEGSSPKAIENKTYTRKRPLPDS*

Protein Length: 518

Fln nts: TTGGGTATATTGAAAGCAAACAGGATATTTTGGGAAAGCAAGAGCTGTTTGGGAGAGGGAAGCTTGTCATGCTCAGAACATGCAACCAGCTTCTACGGCGCCTGTCCAAGGCAAATGATGTCATCTTCTGTGGTCGCATTCTTATGTTTCTAGCACATTTTTTCCCATTGTCAGAGCGTTCAGCTGTTAACATAAAAGGAATTTTCAACACATCTAATGAGACAAAGTATAAAAAAGAACATCCTCCTGATGGAGTTTCTATTGACTTCAATTTTTACAAGACATTCTGGAGTCTACAGGAATATTTTTGCAATCCTGCTCCTATGATTCACACTCTTACCAAGTGGCAAAACTTCATTGCAAGTTTAGCTATTGTGCTGGATACTTTTGAAGCTCAACCCCTTGGTGATGATGATGCAAATGCAAGTGATCTTGACGAAGGCGAGGCTGCAGCTTTCAGCATCAAGTATCTGACGAGTAGTAAACTGATGAGTCTAGAGTTAAAAGATCCTAGCTTTCGACGTCATGTTCTTGTGCAATGCTTAATTATCTTTGACTACTTTAAGTTCCCAGGAAAAGGTGACAAGGATGGTCCAAAGGAAAGCATGAGAGAGGAAATCAAGGCTTATGAGGAGCGTGTAAAGAAGCATCTTGAAATGACACCACCGAAAGGAAGAGAATTTCTCAGTAGCATTGAACACATACTAGAACGTGAAAAAAACTGGGTTTGGTGGAAGCGTGATGGATGTTTGCCATTTGAAAAGCAAGTATCAGAACGGAAAACAACACAAGATGGAGTGAAAAAACGCAGGCCAAGGTGGAGGTTGGGAAACAAGGAACTTGCACAATTATGGAAATGGTCAGACCAGAATCCGAATGCGCTAACAGATGCACAGCGAGTCAAGATGCCATCTGTTACAGATTACTGGAAAGCTCTTGCTGATGATCTAGATCCTTCTGCTGGAATTGAACCGGAGTATCACCACAGAAATAACCGTGTTTACTGTTGGAAAGGCCTACGCTTTTCAGCACGGCAAGACCTGGAGGGGTTTTCCAGGTTCACAGAACATGGTATTGAAGGTGTTGTTCCACCTGAACTACTTCAGCCTGAAATTCGAAACAAGTACCATGGAAAAACTTCTGAGAAATCTAGACGCACTGCTAAAAAGGAAGAGGAAACAAAAGGAGCTGTTACTCAAACTGAAGAAAATCAGGCAAATGGTAAGGTTGCAGAGCTTGATGATGGTGGTCCAAATCAAGAGATAGAGGATGCACCAACTCCAGTTGATGTAGATGCCTTAGGCACATCAACTCAGAGTGGTGCTCCTACACCTGATGAGAGTCAGAAACAGAGCTCTGACATGGAAGCTGGTCAAGAAGGACTGCACTCAGAAGGTGGTAACTCACCTGATCCAAACAGTGCAGACATGGAAGAAGGCCTTATGAAGGATTCAAGTCCTCAGGATAATTCTGTCTTATCAAATGAAGGATCAAGCCCCAAGGCAATTGAGAATAAAACATATACCCGGAAGCGTCCCCTACCAGACTCCTGA___TTATTGGAGTCAAAGTGAATTATTATTGCTTTAATCAGACCCTTAAATACTTGGTAACATCCCGCTATCATTTCTATATCTGTAATGATTAGTATGACTTCCAGAAGTCACGTGAGTAAGCATTTTTTAAATATATTGTTACCAATCATGGGAATTATTAATCTAGGATGTATGGTATATTTGGACTATATCAGAACCTATGTATTTTAGGACATTATAAAGTATTCCAGCACTGCCATGATTGTATACA

Fln Alignment:

Contig4442___YIESKQDILGKQELFGRGKLVMLRTCNQLLRRLSKANDVIFCGRILMFLAHFFPLSERSAVNIKGIFNTSNETKYKKEHPPDGVSIDFNFYKTFWSLQEYFCNPAPMIHTLTKWQNFIASLAIVLDTFEAQPLGDDDANASDLDEGEAAAFSIKYLTSSKLMSLELKDPSFRRHVLVQCLIIXXXXXXXXXXXXXXXXESMREEIKAYEERVKKHLEMTPPKGREFLSSIEHILEREKNWVWWKRDGCLPFEKQVSERKTTQDGVKKRRPRWRLGNKELAQLWKWSDQNPNALTDAQRVKMPSVTDYWKALADDLDPSAGIEPEYHHRNNRVYCWKGLRFSARQDLEGFSRFTEHGIEGVVPPELLQPEIRNKYHGKTSEKSRRTAKKEEETKGAVTQTEENQANGKVAELDDGGPNQEIEDAPTPVDVDALGTSTQSGAPTPDESQKQSSDMEAGQEGLHSEGGNSPDPNSADME
F6HVB5_________________YIESKQDILGKQELFARGKLVMLRTCNQLLRRLSKANDVVFCGRILMFLAHFFPLSERSAVNIKGVFNTSNETKYEKD-APEGISIDFNFYKTFWSLQEHFCNPASISLAPTKWQKFTSNLMVVLNTFEAQPLSDEEGNANNLEE-EAATFSIKYLTSSKLMGLELKDPSFRRHILVQCLILFDYLKAPGKNDKDLPSDSMKEEIKSCEERVKKLLEMTPPKGKEFLHNIEHILEREKNWVWWKRDGCPPFERQPIEKKAVQDGAKKRRPRWRMGNKELSQLWKWADQNPNALTDPQRARTPAVSEYWKPLAEDMDLSAGIEAEYHHKNNRVYCWKGLRFAARQDLDGFSRFTEYGIEGVVPMELLPSDVRSKYQAKPSDRSKRA--KKEETKGAAQQAEENQIATPASEIDGEGTRVDLEASAAPMDTDVTATT-----PTADENQKQSSDTDAGQEAGQSEADAEAEAGMIDGE

SNPs (tot: 35)

Position	A %	C %	G %	T %	Probability
21		66		33	0.997452
22	66		33		0.997452
23			66	33	0.997452
126	16			83	0.994512
127	16			83	0.994512
128	16	83			0.994512
129	16			83	0.994512
131	16			83	0.994512
132			83	16	0.994512
133	16		83		0.994512
177	20	80			0.995493
178	20		80		0.995493
180			20	80	0.995493
181		80		20	0.995493
240		83		16	0.994512
241	83		16		0.994512
353	20	80			0.999996
355			20	80	0.999996
356		80		20	0.999996
536	10		90		0.90298
539	90			10	0.90298
552	11			88	0.923564
566	16		66	16	0.988813
567		16		83	0.994512
570		75		25	0.996473
1009	12	87			0.992554
1132	14	85			0.993533
1133		85		14	0.993533
1134	85		14		0.993533
1218		80		20	0.995493
1341	16		83		0.994512
1349	16			83	0.994512
1352			80	20	0.995493
1353	80			20	0.995493
1770	25			75	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain