SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene4425

Length: 959 nt

UniGene Fasta

Ace file of the UniGene biog3_v1.0_unigene4425

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene2282	11/12

Source	Descriptions	Term	Type	Identity
AutoFact	FGGY-family pentulose kinase n=1 Tax=Opitutaceae bacterium TAV2 RepID=C0ADX7_9BACT	-	-	50%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	67%
Blast2go	fggy family of carbohydrate kinase	-	-	81%

Source	ECs	Term	Type	e value	Identity
Blast2go	Transferases, Transferring phosphorous-containing groups, Phosphotransferases with an alcohol group as acceptor.	EC:2.7.1.-	-	0.0	81%

Source	KEGGs	Term	Identity
Blast2go	Pentose phosphate pathway	00030	81%
Blast2go	Lipopolysaccharide biosynthesis	00540	81%
Blast2go	Nicotinate and nicotinamide metabolism	00760	81%
Blast2go	Metabolic pathways	01100	81%

Source	GOs	Term	Type	Identity
Blast2go	carbohydrate metabolic process	GO:0005975	Biological Process	81%
Blast2go	phosphotransferase activity, alcohol group as acceptor	GO:0016773	Molecular Function	81%
Blast2go	carbohydrate kinase activity	GO:0019200	Molecular Function	81%
Blast2go	chloroplast	GO:0009507	Cellular Component	81%

Source	InterPros	Term	Type	Identity
Sma3	Carbohydrate kinase, FGGY	IPR000577	-	-
Sma3	Carbohydrate kinase, FGGY-related	IPR006003	-	-
Sma3	Carbohydrate kinase, FGGY, N-terminal	IPR018484	-	-
Sma3	Carbohydrate kinase, FGGY, C-terminal	IPR018485	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LK74

Fln msg: Overlapping hits, possible frame ERROR between 314 and 254, your sequence is shorter than subject: 273 - 575

Fln protein: HRMVVSMWYIYMPHGYISEKNFIPGVWGPFWSAMVPELWLTEGGQSATGALLDHMVENHAAAPILANRAASQNVSLYELLNRTxxxxxxxxxxxxxxxxxxxxxxLPDFHGNRSPVADPKAKGMICGLTLDTSDKSLAILYLSTVQSIAYGTRHIIEHCNSHGHKIDTLFACGGLSKNSLYVQEHADIIGFPVILPREKESVLLGAAILGAVAAKKYATLHDAMKALNAPGQVFQPCQDPEVKKYHDAKYRIFRALYEQQLSYRAIISDALG*

Protein Length: 274

Fln nts: GCCACAGAATGGTTGTTAGTATGTGGTACATCTACATGCCACATGGCTATATCTCAGAAAAAAATTTCATTCCAGGTGTCTGGGGGCCTTTTTGGTCAGCAATGGTACCAGAGTTATGGCTTACTGAAGGTGGACAGAGTGCAACTGGGGCTTTATTGGATCATATGGTTGAAAATCATGCTGCGGCTCCTATTCTGGCAAACCGTGCAGCATCACAAAATGTCTCACTATATGAGCTACTAAATAGAACTxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxCTTCCAGACTTCCACGGCAACAGATCTCCAGTTGCAGATCCGAAAGCAAAAGGGATGATTTGTGGCCTGACACTTGATACCAGTGACAAATCATTGGCTATTTTGTATCTTTCCACAGTACAAAGCATTGCATATGGCACACGTCACATCATTGAACATTGCAATTCTCATGGTCATAAGATTGATACACTTTTTGCATGTGGAGGACTCTCCAAAAATTCTTTGTATGTTCAAGAGCATGCAGACATCATTGGTTTCCCTGTGATATTGCCAAGAGAGAAAGAGTCAGTTCTCCTAGGTGCAGCTATATTGGGTGCAGTTGCTGCTAAGAAGTATGCCACTCTTCATGATGCAATGAAAGCACTTAATGCACCAGGCCAGGTGTTCCAGCCATGCCAAGACCCCGAGGTGAAGAAATACCATGATGCAAAATACCGTATATTTCGTGCACTATATGAACAACAACTCTCTTATCGAGCAATTATAAGTGATGCTCTTGGTTAAATTAAACATTATGTTGTATCATGGACACAACTCTCAAGTGTAATACTCATTTGATAGCATCATCTCATATTTGTTTTAATACGGGAATATGATGGCTTTCTGTTCACTGTAAGTGGTCAGGAACGTTCCAAATCACATT

Fln Alignment:

Contig4425___HRMVVSMWYIYMPHGYISEKNFIPGVWGPFWSAMVPELWLTEGGQSATGALLDHMVENHAAAPILANRAASQNVSLYELLNRTLxxxxxxxxxxxxxxxxxxxxxLPDFHGNRSPVADPKAKGMICGLTLDTSDKSLAILYLSTVQSIAYGTRHIIEHCNSHGHKIDTLFACGGLSKNSLYVQEHADIIGFPVILPREKESXXXXXXXXXXXXXKKYATLHDAMKALNAPGQVFQPCQDPEVKKYHDAKYRIFRALYEQQLSYRAIISDAL
B8LK74_________________HRMVLVCGTSTCHMAISQKKVFIPGVWGPFWSAMVPELWLTEGGQSATGALLDHMVENHAAAPILANRAASQNVSLYELLNRTLxxxxxxxxxxxxxxxxxxxxxLPDFHGNRSPVADPKAKGTISGLTLDTNDKSLAILYLATVQSIAYGTRHIIEHCNSHGHKIDTLFACGGLSKNSLYVQEHADIIGCPVILPREKESVLLGAAILGAVSAKKYATLHDAMKALNAPGQVFQPSQDPKVKKYHDAKYRIFRALYEQQLSYRAIISDAL

SNPs (tot: 7)

Position	A %	C %	G %	T %	Probability
97	33	66			0.997452
673	83			16	0.994512
688	20		80		0.995493
691		80		20	0.995493
692		80		20	0.995493
742	25		75		0.996473
746			75	25	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain