SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene4420

Length: 1378 nt

UniGene Fasta

Ace file of the UniGene biog3_v1.0_unigene4420

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene5076	26/26

Source	Descriptions	Term	Type	Identity
AutoFact	FAD/NAD(P)-binding oxidoreductase domain-containing protein [Arabidopsis thaliana] gb\|AAG29233.1\|AC079732_4 hypothetical protein [Arabidopsis thaliana] gb\|AAL38754.1\| unknown protein [Arabidopsis thaliana] gb\|AAM91765.1\| unknown protein [Arabidopsis thali	-	-	72%
FL-Next	sp=Carotenoid isomerase, chloroplastic; Daucus carota (Carrot).	-	-	30%
Blast2go	prolycopene chloroplastic-like	-	-	87%

Source	ECs	Term	Type	e value	Identity
Blast2go	All-trans-retinol 13,14-reductase.	EC:1.3.99.23	-	0.0	87%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Retinol metabolism	00830		0.0	87%

Source	GOs	Term	Type	Identity
Blast2go	oxidation-reduction process	GO:0055114	Biological Process	87%
Blast2go	all-trans-retinol 13,14-reductase activity	GO:0051786	Molecular Function	87%
Blast2go	isomerase activity	GO:0016853	Molecular Function	87%
Blast2go	chloroplast	GO:0009507	Cellular Component	87%

Source	InterPros	Term	Type	Identity
Sma3	Glucose-methanol-choline oxidoreductase, N-terminal	IPR000172	-	-
Sma3	Protease inhibitor I4, serpin	IPR000215	-	-
Sma3	Glucose-inhibited division protein A-related	IPR002218	-	-
Sma3	Amine oxidase	IPR002937	-	-
Sma3	Monooxygenase, FAD-binding	IPR002938	-	-
Sma3	Fumarate reductase/succinate dehydrogenase flavoprotein, N-terminal	IPR003953	-	-
Sma3	FAD dependent oxidoreductase	IPR006076	-	-
Sma3	FAD-dependent pyridine nucleotide-disulphide oxidoreductase	IPR013027	-	-
Sma3	Glycoside hydrolase, family 1, active site	IPR018120	-	-

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: sp_plants

Fln subject: Q2VEX9

Fln msg: query STOP codon too far from subject stop. Distance to subject end: 270 aas, putative chimeric sequence, your sequence is shorter than subject: 107 - 615

Fln protein: NVAPSLLESFIKMGPQGALSATKLLRPFSEILDSLDIKDPFIRNWLDLLCFLLSGLKANGTLAAEIVYMFAEWYKPGSVLEYPLHGSGAIVNALVRGLENLEEGFP*

Protein Length: 108

Fln nts: AATGTTGCACCTTCTCTCCTGGAGTCTTTTATCAAGATGGGACCTCAAGGAGCACTTTCTGCAACTAAGCTGCTTCGTCCTTTCTCAGAGATTCTTGACTCGTTGGATATAAAAGATCCATTTATACGTAACTGGTTGGATCTACTTTGTTTTCTGCTTTCAGGATTAAAAGCCAATGGAACACTAGCTGCAGAAATTGTGTATATGTTTGCAGAATGGTATAAGCCAGGTTCTGTTCTTGAATACCCTCTTCATGGTTCTGGAGCAATAGTCAATGCACTTGTTCGGGGACTGGAAAATTTGGAGGAAGGCTTTCCTTAG___GTTCTCATGTTGAAGAAATTGTTATTGAAGGTGGTCGAGCTGTTGGTGTCAAGCTGACAAGTGGACTTTTTATAAAAGCAAAGAAGGCTGTCGTCAGTAATGCATCAATGTGGGACACCACGAAATTGCTACCTACAGCTGCATTGCCGAATGCTTATCAGGAAAAAGTGAAAAAAACACCCCAATGTGACTCTTTCATGCATCTCCATCTTGGTTTTGATGCAATGGACATTCCAAAGGACCTAGAACTGCATCATATTGTTGTAAATGACTGGAAGCCAGGGGTGGATGCTCAGCAAAACGTTGTGCTCATTTCAATACCGAGTGTGGTAAGTCCACATTTAGCGCCTAAGGGAAAGCATGTACTTCATGCATACACCCCTGGAACAGAACCATATGATCTGTGGGTTGGATTGGATCGTAGAAGTGCAGAATACAAGAAGCTCAAGGCTGAGCGCTCTGAGGTAATGTGGAGAGCCGTTGAACGTGTACTCGGACCTGGATTTTCTCGAGAAAAATGTGAGGTGAAGTTGGTTGGTACACCACTGACACACCAACGGTTTCTTCGGCGGAATAGAGGTACATATGGGCCTGCAATTCGTGCAGGAGAAGAATCATTTCCTGGGCAAGGAACGCCCATTCAGCAGCTTTACTGTTGTGGGGATTCCACATTTCCGGGCATTGGGGTTCCTGCCGTGGCAGCGAGTGGTTCCATTGTGGCTAATTCTCTGGTCTCTGTTTCAGAACATACAAAGCTTTTGGATGCCATAGGGATCTGATGATTATTGAAAGGTATATATTTATATTCTGTAATTTATCCTTCAGTGCTATTTGGGATTTTCGATGCCTGCCTGCCTGTATATTCAGTCTACAGAAACAAATATACTTTGTAATATAGTTTCTATACGTGATACTGCGAATACCCCTGACATCTCTGTCCTTTAGAGGTTTTAGAATGTGTGACGGAGAGGATATTGAAAGTGAAGCCCTCGATCAAACATGAACGATTTGAATTGCTTTTGTTAGCTCCAATAGATGTCTTCAGGGATTTTACATT

Fln Alignment:

Contig4420___IKDPFIRNWLDLLCFLLSGLKANGTLAAEIVYMFAEWYKPGSVLEYPLHGSGAIVNALVRGL
Q2VEX9_________________IKDPEVLSFIDAECFIVSTVNALKTPMINASMVLCDRHYGG--INYPVGGVGGIAKSLAKGL

SNPs (tot: 32)

Position	A %	C %	G %	T %	Probability
153	33			66	0.997452
154	33	66			0.997452
537	20			80	0.995493
538		20	80		0.995493
539	20		80		0.995493
586	33		66		0.997452
587		33		66	0.997452
588	33			66	0.997452
589			66	33	0.997452
828			16	16	0.988813
836	20	80			0.995493
837		20	80		0.995493
839			80	20	0.995493
840	60			20	0.99255
867		87	12		0.992554
868	87			12	0.992554
885	25		75		1.0
886		25	75		1.0
887	25			75	1.0
1044	12			87	0.992554
1045	12		87		0.992554
1046			87	12	0.992554
1047		87	12		0.992554
1065		12		87	0.992554
1092	11	88			0.923564
1096	88			11	0.923564
1110		12		87	0.992554
1132		14		85	0.993533
1133	14			85	0.993533
1134		85		14	0.993533
1191	20			80	0.995493
1194			80	20	0.995493

SSRs (tot: 1)

Start position	End position	Sequence	Length
1166	1179	TGCC TGCC TGCC TG	14

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain