SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene4419

Length: 1765 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog3_v1.0_unigene4419 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene13793	2/26
SustainPine v2.0	sp_v2.0_unigene28212	24/26

Source	Descriptions	Term	Type	Identity
AutoFact	putative senescence-associated protein [Arabidopsis thaliana] ref\|NP_974095.1\| putative senescence-associated protein [Arabidopsis thaliana] gb\|AAG52167.1\|AC020665_12 unknown protein; 33791-31527 [Arabidopsis thaliana] gb\|AEE34495.1\| putative senescence-a	-	-	55%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	63%
Blast2go	senescence-associated protein	-	-	74%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: tr_plants

Fln subject: D7TSN5

Fln msg: atg_distance in limit (1-15): atg_distance = 38, Unexpected STOP codon in 5 prime region,

Fln protein: MPNMALSRGVSFETKMLNQVDSYGTSYKDVKMWKCTWLAPRLKHKGQCFADKIDSVFQHARLPFPSHISRARNSEIEECLRDCEDVLSDPSTCQCENYSEATRDPSVPGKEDGHIFNRMCPSDRRCLFSPFSSNSCRGLANAAKYACNDAKFMNERARNDIILLSRGITILNDRARQDFAIIGSEFLKLDARAREDTGKVDSGVKKKAACLKHIAEGLTDKAQTKLKMAVAEHWSDGALEADLRRADMHARRRAMEDAFMALEFVKNIHDMMVRTMYNVPRTVESEDEKGLVEGLTIEKKGKALKIFPGKVSDDQRAAMQNAYWSMASALSEADGIDYTNPDELELLVAALLDMDAIDGKSGASLLAECSNSPDVGTRQALANALADAPSMWTLGNAGMGALQRLAEDSNPAVAAAASKAIEELKRQWQIEEGDTLVFSMDESLSDSEKMNPNGDVEDESD*

Protein Length: 463

Fln nts: AATGTTGCAAATAAGTTCTTGTTTACATTACTTTCGTGACGCCTGAGGTGATGCCAAATATGGCTTTGTCCAGAGGTGTTTCTTTCGAAACTAAGATGCTTAATCAGGTTGATTCTTATGGCACCAGTTACAAGGATGTAAAGATGTGGAAATGCACATGGTTAGCACCAAGGCTGAAACACAAGGGACA_-_ATGTTTTGCTGATAAAATAGACTCAGTTTTTCAGCATGCAAGATTACCTTTTCCTTCTCATATTTCTCGAGCTCGGAACAGTGAAATTGAAGAGTGCCTTAGAGATTGTGAAGATGTCCTGTCAGACCCTTCAACCTGTCAGTGTGAAAACTATTCGGAGGCAACAAGGGACCCCTCAGTTCCAGGCAAGGAAGATGGACACATTTTTAACCGCATGTGTCCAAGTGATCGTCGATGTTTATTTTCACCCTTTTCTTCTAATTCTTGTCGAGGCTTAGCAAATGCTGCCAAATATGCATGCAATGATGCCAAGTTTATGAATGAACGAGCACGCAATGACATCATTTTACTCTCACGAGGGATCACAATATTGAATGATCGTGCACGTCAGGATTTTGCAATTATTGGCTCTGAATTTCTCAAACTTGATGCTCGTGCAAGAGAGGATACTGGAAAGGTGGACAGTGGTGTCAAGAAAAAGGCTGCATGTCTTAAGCATATAGCAGAGGGTCTCACGGATAAAGCACAAACTAAGTTAAAGATGGCAGTAGCTGAACACTGGAGTGATGGGGCTTTAGAAGCTGATTTACGGCGAGCTGATATGCATGCACGACGGCGTGCCATGGAAGATGCCTTCATGGCTTTAGAGTTTGTCAAGAACATTCACGATATGATGGTCAGAACAATGTACAATGTACCAAGGACTGTAGAGTCTGAAGATGAGAAGGGCTTGGTTGAGGGGCTGACTATTGAGAAGAAGGGAAAAGCACTTAAAATATTTCCAGGAAAAGTCTCTGATGATCAAAGAGCTGCTATGCAGAATGCATATTGGAGTATGGCATCTGCCCTGTCAGAAGCTGATGGCATTGACTACACCAATCCAGATGAGTTGGAACTATTAGTGGCAGCTCTGCTAGATATGGATGCAATAGATGGAAAAAGTGGTGCTTCTCTTCTCGCAGAATGTTCAAACTCGCCCGACGTTGGTACAAGGCAAGCACTAGCAAATGCTCTAGCAGATGCTCCGTCTATGTGGACTCTTGGTAATGCGGGAATGGGAGCATTACAGAGACTAGCAGAAGATAGCAATCCAGCTGTTGCAGCTGCTGCATCCAAGGCCATTGAAGAGCTAAAAAGACAATGGCAAATAGAGGAAGGGGACACTTTAGTCTTTAGTATGGATGAAAGCTTGTCAGACTCAGAAAAAATGAATCCAAATGGAGATGTTGAGGACGAGTCAGATTAATCTCAGTCGTATGAATTTTGTTGACCTTGAAAGTTTAGTACGGGAATGTTTTTTCCCTGCAATGCAAGCGTTATATGTTGAATCGTATTTTCAATAATGTATATATTTGTGTTAGTTGGCTTCAACGATATTTCCTATTCTCTGCTACAAAATGGAGGACATGTTACATGCAATGTAAATCTTTGTGGTTGCTGCCCACGTGTTTTTTCAAAGTTACAACTGTGGTGCAAATCCATATCGAGCCTTTTAAAAGGCCATTTCTTTCTGTATATCGAATGTACTCTGATGAAACATGTCTCGAACATTTTTCTCCAATGGTAAAGTGTACA

Fln Alignment:

Contig4419___QC-ENYSEATRDPSVPGKEDGHIFNRMCPSDRRCLFSPFSSNSCRGLANAAKYACNDAKFMNERARNDIILLSRGITILNDRARQDFAIIGSEFLKLDARAREDTGKVDSGVKKKAACLKHIAEGLTDKAQTKLKMAVAEHWSDGALEXXXXXXXXXXXXXXXXXAFMALEFVKNIHDMMVRTMYNVPR-TVESEDEKGLVEGLTIEKKGKALKIFPGKVSDDQRAAMQNAYWSMASALSEADGIDYTNPXXXXXXXXXXXXXXAIDGKSGASLLAECSNSPDVGTRQALANALADAPSMWTLGNAGMGALQRLAEDSNPXXXXXXXXAIEELKRQWQIEEGDTLVFSMDESLSDSEKMNPNGDVED
D7TSN5_________________QCVEHYSDRSDIPSVQLEDE---------EDENLVMPERIIHSNQGLAEACKFVYNDAKFVNERARNDMVLLSRGIMRLDARARQDVAILGSEFLKLDARAREDTEKIDHGVKKKAERLHHIATILKDKAQSRLKSAADKHWSDGALEADLRRADFCAKQRAMEDALMALEFVKNIHDMMVSKMYKLKKGTPSSNDTMGHI---MLEKNGKTLDFFPGEVSTDRITAIQEVYLSMASALSEADGIDYTDPEELELLVTTLIDLDAMDGKSSVSLLAECSSSPDVNTRQALANALAAAPSMWTLGNAGMGALQRLAEDSNPAIAVAASKAIYELKKQWEIEEGDSWRFTMNQ-----KPMKEADDVED

SNPs (tot: 8)

Position	A %	C %	G %	T %	Probability
1293	33			66	0.997452
1294	33			66	0.997452
1295			66	33	0.997452
1297		66		33	0.997452
1471	16			83	0.994512
1472	16	83			0.994512
1474			16	83	0.994512
1475		83		16	0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain