SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene4415

Length: 1017 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog3_v1.0_unigene4415 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene16412	6/30
SustainPine v2.0	sp_v2.0_unigene26527	17/30
SustainPine v2.0	sp_v2.0_unigene60528	6/30

Source	Descriptions	Term	Type	Identity
AutoFact	Anthocyanidin synthase n=1 Tax=Ginkgo biloba RepID=B2M0X8_GINBI	-	-	76%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	82%
Blast2go	anthocyanidin synthase	-	-	83%

Source	InterPros	Term	Type	e value	Identity
Sma3	Oxoglutarate/iron-dependent oxygenase	IPR005123	-	0.0	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NVW2

Fln msg: Distance to subject end: 60 aas, your sequence is shorter than subject: 300 - 359

Fln protein: MAPARVESLALSGLAAIPAEYVRPVEERPTDCVLNLKGGADEDKGPQIPVVDVAGWDSADEEVTKEIGRQVAKASREWGVMQLLNHGISETLIERLQSAGKAFFDLPVEEKEKYANDHAAGKIAGYGSKLANNASGQLEWEDYYFHLLWPEHRRDMTTWPKHPEEYIEVTDAYGRLIRNLVTKMLRTLSLDLGVEEDRMERVLGGENLEMQLKINYYPRCPQPELALGVEAHTDISALTFLLHNMVPGLQLFHEGNGSPPNAFPAPSLSTLATKSRF*ATDNSRAGLHRGLVNKEKVRIS

Protein Length: 301

Fln nts: CGGGAACTCAGACCCACGCAATATATACACTGCTGCAGAGCACTGTCGATCTGAGTCTGTTTCCACTTTCTTGTTCGGTGAATCCGATAGAGTAGTTTCCAACTGGTCGGTCATC_-_ATGGCACCAGCGAGAGTGGAGAGCCTGGCATTGAGCGGCCTGGCTGCAATTCCTGCCGAGTACGTGAGACCGGTGGAGGAGAGACCCACCGACTGCGTTCTCAACTTGAAAGGAGGAGCAGATGAGGACAAAGGCCCGCAGATTCCAGTGGTGGACGTTGCCGGATGGGATTCTGCGGACGAGGAGGTCACGAAGGAGATCGGGCGTCAGGTGGCGAAGGCGAGCAGAGAGTGGGGGGTCATGCAGTTGCTGAACCACGGCATATCTGAGACTCTGATAGAGCGACTTCAGTCAGCGGGGAAGGCGTTCTTCGATCTCCCTGTTGAGGAGAAAGAGAAGTATGCGAACGACCACGCAGCCGGGAAGATAGCGGGGTACGGTTCCAAACTCGCCAACAACGCCAGTGGTCAGCTTGAATGGGAGGACTACTATTTCCACCTGCTATGGCCTGAACACCGCAGAGACATGACCACATGGCCTAAACACCCAGAAGAATACATCGAGGTAACAGACGCCTACGGCCGGCTGATACGGAACCTCGTGACCAAAATGCTCCGCACGCTTTCGTTGGATCTGGGCGTGGAGGAAGACAGAATGGAGCGCGTGCTCGGCGGTGAAAACCTGGAAATGCAATTGAAAATAAATTATTATCCCCGCTGCCCACAACCAGAGCTTGCTCTCGGAGTGGAGGCGCACACCGACATCAGCGCACTCACATTCCTTCTGCATAACATGGTGCCCGGCCTTCAGCTCTTCCATGAGGGGAATGGGTCACCGCCAAATGCATTCCCGGCGCCCTCATTGTCCACATTGGCGACCAAGTCGAGATTTTGAGCAACGGACAATTCAAGAGCGGGACTGCACAGAGGGCTCGTGAACAAAGAGAAGGTGAGAATTTCATG

Fln Alignment:

Contig4415___MAPARVESLALSGLAAIPAEYVRPVEERPTDCVLNLKGGADEDKGPQIPVVDVAGWDSADEEVTKEIGRQVAKASREWGVMQLLNHGISETLIERLQSAGKAFFDLPVEEKEKYANDHAAGKIAGYGSKLANNASGQLEWEDYYFHLLWPEHRRDMTTWPKHPEEYIEVTDAYGRLIRNLVTKMLRTLSLDLGVEEDRMERVLGGENLEMQLKINYYPRCPQPELALGVEAHTDISALTFLLHNMVPGLQLFHEGNGSPPNAFPAPSLSTLATKSRF*ATDNSRAGLHRGLVNKEKVRIS
A9NVW2_________________MAPARVESLALSGLAAIPPEYVRPVEERPTECVLKVKGV--EDEGPQIPVVDIAGWDSADEEIKKEIGRQVAKASREWGVMQLLNHGISEILIERLQAAGKAFFDLPVEEKEKYANDHAAGKIAGYGSKLANNASGQLEWEDYYFHLLWPEQRRDMTTWPKHPQEYIEVTDAYGREIRKLVTKILATLSSDLGVEEERLERVLGGENLEMQLKINYYPRCPQPELALGVEAHTDISALTFLLHNMVPGLQLFYEGKWVTAKCIPGALIVHIGDQVEILSNGKFTSGLHRGLVNKEKVRIS

SNPs (tot: 24)

Position	A %	C %	G %	T %	Probability
469	20			80	0.995493
470		20	80		0.995493
471	20		80		0.995493
472	80			20	0.995493
473	80			20	0.995493
510	25		75		0.996473
609		33	66		0.997452
614	33	66			0.997452
646			66	33	0.997452
909		11		88	0.923564
910	12		87		0.992554
911	87			12	0.992554
912		87		12	0.992554
933	11			88	0.923564
936	11	77			0.968132
937	11	11	77		0.968132
938		11	66	11	0.944822
950	85		14		0.993533
956	14		85		0.993533
963	16	66			0.988813
965		16	83		0.994512
967		83		16	0.994512
970	75	25			0.996473
988			66	33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain