SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene4389

Length: 1790 nt

UniGene Fasta

Ace file of the UniGene biog3_v1.0_unigene4389

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene1021	27/27

Source	Descriptions	Term	Type	Identity
AutoFact	GTP binding protein, putative n=1 Tax=Ricinus communis RepID=B9SRI2_RICCO	-	-	67%
FL-Next	sp=Dynamin-like protein ARC5; Arabidopsis thaliana (Mouse-ear cress).	-	-	70%
Blast2go	gtp binding	-	-	81%

Source	GOs	Term	Type	Identity
Blast2go	peroxisome fission	GO:0016559	Biological Process	81%
Blast2go	circadian rhythm	GO:0007623	Biological Process	81%
Blast2go	GTP catabolic process	GO:0006184	Biological Process	81%
Blast2go	chloroplast fission	GO:0010020	Biological Process	81%
Blast2go	identical protein binding	GO:0042802	Molecular Function	81%
Blast2go	GTPase activity	GO:0003924	Molecular Function	81%
Blast2go	GTP binding	GO:0005525	Molecular Function	81%
Blast2go	peroxisome	GO:0005777	Cellular Component	81%
Blast2go	chloroplast outer membrane	GO:0009707	Cellular Component	81%

Source	InterPros	Term	Type	Identity
Sma3	Dynamin, GTPase domain	IPR001401	-	-
Sma3	WD40 repeat	IPR001680	-	-
Sma3	WD40/YVTN repeat-like-containing domain	IPR015943	-	-
Sma3	Aryldialkylphosphatase, zinc-binding site	IPR017947	-	-
Sma3	WD40-repeat-containing domain	IPR017986	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-
Sma3		IPR019782	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: sp_plants

Fln subject: Q84N64

Fln msg: Unexpected stop codon in the beginning of your sequence, your sequence is shorter than subject: 549 - 777

Fln protein: CMWNSF*GHQQVFLMEAYWEKLLFFTSVPSGRVGANRDAVYRSNDQFKEAVSLREAQDVAALEEKLGRPLLKGECARIGISKLKCFLEELLQRRYMDNVPLIVPLLDKESRNIKRKLRQIMHELGNLDEAKLKEKGRLFRDSFLAKLSLLLKGTVVAPPERFGETLQDERVHGGAFLGPDGVQIPYKLMPNGGMRLYGGAQYHRAMAEFRFVVGSIKCPSISREEIINACGVEDIHDGTNYFRTACVIAVAKARDTFEPFLHQLGFRLSHILRRLLPITLYLLQKDGEYLSGHDVFVRRVTTAFYSFAEATEQSCREKCMEDLTSTTRYVTWSLHNKNRAGLRQFLDSFASSEQTSLNNAAIIGATAQDLAVGSSANGNKQDTKPRSETKTNQSFSSTEVSGVNQTAETRLVDLLESTLWNRRLAPSSEQIVNALVAQIFQGIRDHFLTSAELKFNCFFLMPVVDKFPALLREDLEAAFEDDLDNAFDIANARRALDQQKRDLEIELRRIERLKEKFEAIHHDLSGYQSSSGKDIANQITMLNIHERI*

Protein Length: 550

Fln nts: AATGTATGTGGAACTCTTTCTGAGGCCACCAGCAAGTGTTCTTGATGGAAGCATATTGGGAGAAACTCCTTTTTTTCACGTCAGTACCATCTGGAAGAGTTGGAGCAAATCGAGATGCCGTTTATAGATCAAATGATCAATTCAAAGAAGCTGTTTCCTTGAGAGAAGCCCAGGATGTGGCAGCTTTGGAAGAGAAGTTAGGACGACCTTTGTTAAAGGGAGAGTGTGCTAGAATTGGTATTAGCAAACTCAAATGTTTCTTGGAAGAACTTTTACAACGAAGGTATATGGATAATGTTCCATTGATTGTCCCCCTTTTGGATAAGGAGTCCCGGAATATCAAAAGAAAGCTCCGACAGATAATGCATGAACTTGGTAATCTGGATGAAGCAAAACTGAAGGAGAAGGGTCGTCTTTTTCGTGATTCCTTTCTGGCTAAGCTTTCATTGCTTTTAAAGGGAACTGTCGTAGCTCCTCCTGAACGATTTGGAGAGACCCTGCAAGATGAGCGAGTTCATGGAGGAGCATTCTTAGGCCCGGATGGTGTTCAGATCCCTTACAAACTGATGCCTAATGGTGGAATGCGCCTTTATGGAGGCGCTCAATATCACAGGGCCATGGCAGAATTCCGTTTTGTTGTTGGAAGCATTAAATGCCCATCTATAAGCCGAGAGGAGATTATAAATGCATGTGGAGTAGAAGATATTCATGATGGTACAAATTATTTTAGAACTGCTTGTGTGATAGCTGTTGCAAAAGCACGAGACACTTTTGAGCCGTTTCTTCATCAACTAGGATTCAGGCTATCCCACATTTTAAGGAGGCTGCTTCCGATTACTCTGTACTTACTTCAGAAAGACGGCGAATACCTAAGTGGCCATGATGTGTTTGTCAGGCGTGTCACAACTGCATTCTACTCTTTTGCTGAGGCTACAGAACAGTCTTGCCGAGAGAAATGTATGGAAGACCTTACAAGTACAACACGCTATGTCACCTGGTCTCTTCATAACAAGAATCGAGCTGGGCTGCGGCAGTTTCTAGATTCCTTTGCGAGTAGTGAACAGACATCCCTCAATAATGCTGCTATAATAGGGGCAACTGCTCAGGATTTGGCAGTTGGATCAAGTGCAAATGGGAACAAGCAAGACACTAAGCCTCGTTCAGAGACTAAAACTAACCAATCTTTTTCAAGCACAGAGGTGTCAGGAGTAAACCAAACAGCTGAAACACGTCTTGTTGACTTGTTGGAAAGCACGCTTTGGAATCGCAGACTTGCACCTTCCTCTGAACAGATTGTAAATGCTTTAGTGGCACAGATTTTCCAAGGCATCAGGGATCATTTTTTGACATCTGCAGAACTAAAGTTCAATTGCTTCTTCCTCATGCCAGTAGTGGACAAGTTTCCAGCGCTGCTACGTGAAGACTTGGAGGCTGCATTTGAAGATGACTTGGATAATGCATTTGATATAGCAAATGCACGAAGGGCTTTAGACCAACAGAAAAGGGATCTAGAGATTGAACTTCGGAGGATTGAGAGACTTAAAGAAAAATTTGAAGCCATTCATCATGATCTAAGTGGATATCAATCCTCTTCTGGAAAAGATATTGCAAATCAGATTACTATGTTAAACATTCATGAGAGAATTTAA___GTGCGATTACTTTGCTTAAGCTAATATTTTGTTATATTTCATGAGGTTCAACTTGCACTCTGCTGAGGCATGTTATTGGATTCTCTTTCATTGTGTTGTAAAATAAGTGGAAGTCAATACTTTGTACTCGGACTCTCCAAC

Fln Alignment:

Contig4389___FFTSVPSGRVGANRDAVYRSNDQFKEAVSLREAQDVAALEEKLGRPLLKGECARIGISKLKCFLEELLQRRYMDNVPLIVPLLDKESRNIKRKLRQIMHELGNLDEAKLKEKGRLFRDSFLAKLSLLLKGTVVAPPERFGETLQDERVHGGAFLGPDGVQIPYKLMPNGGMRLYGGAQYHRAMAEFRFVVGSIKCPSISREEIINACGVEDIHDGTNYFRTACVIAVAKARDTFEPFLHQLGFRLSHXXXXXXXXXXXXXQKDGEYLSGHDVFVRRVTTAFYSFAEATEQSCREKCMEDLTSTTRYVTWSLHNKNRAGLRQFLDSFASSEQTSLNNAAIIGATAQDLAVGSSANGNKQDTKPRSETKTNQSFSSTEVSGVNQTAETRLVDLLESTLWNRRLAPSSEQIVNALVAQIFQGIRDHFLTSAELKFNCFFLMPVVDKFPXXXXXXXXXXXXXXXXXXXXIANARRALDQQ
Q84N64_________________FFTSVPSGRVGYGQDSVYKSNDEFKQAVSLREMEDIASLEKKLGRLLTKQEKSRIGISKLRLFLEELLWKRYKESVPLIIPLLGKEYRSTVRKLDTVSKELSSLDEAKLKERGRTFHDLFLTKLSLLLKGTVVAPPDKFGETLQDERTQGGAFVGTDGLQFSHKLIPNAGMRLYGGAQYHRAMAEFRFLVGAIKCPPITREEIVNACGVEDIHDGTNYSRTACVIAVAKARETFEPFLHQLGARLLHILKRLLPISVYLLQKEGEYLSGHEVFLKRVASAFNSFVESTEKSCRDKCMEDLASTTRYVTWSLHNKNRAGLRQFLDSFGGTEHNTTSGNAIGFSLPQD------ALGGTTDTKSRSDVKLSHLASNIDSGSSIQTTEMRLADLLDSTLWNRKLAPSSERIVYALVQQIFQGIREYFLASAELKFNCFLLMPIVDKLPALLREELENAFEDDLDSIFDITNLRQSLDQK

SNPs (tot: 10)

Position	A %	C %	G %	T %	Probability
146	80			20	0.995493
149	80			20	0.995493
477	33	66			0.997452
478	33	66			0.997452
480		66		33	0.997452
963	25		75		0.996473
964		25		75	0.996473
967			75	25	0.996473
1486		80		20	0.995493
1487			80	20	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain