SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene4371

Length: 305 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene4371
AATGTGAGAAAGATAAACTCAATAGCAATTCTGAAATAAAGGGAAAGGTCTCTTTAACTTCTCATGCTGAAGGTGATACTTCAAAGAAAGATTCAGAAGTGGGCTGGAAAAAGCAGCACCCTGACATGAGACATTTTATCCGGAAGAAGGTGGAGGCATACATCAAGGAACATATAAGACCTCTCTGTAAAAGTGGGGTAGTTACAGTAGAGCAGTATCGATGGGCTGTTGGTAAGACAGTCGAGAAGGTTATGAAATATCATCGTAATACAAAAAGTGCAGATTTCCTTATAACAGAGGGAAAT

Ace file of the UniGene biog3_v1.0_unigene4371 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene7569	4/4

Source	Descriptions	Term	Type	Identity
AutoFact	Unassigned protein	-	-	-
FL-Next	sp=Uncharacterized protein At4g10930; Arabidopsis thaliana (Mouse-ear cress).	-	-	80%
Blast2go	protein	-	-	51%

Source	InterPros	Term	Type	Identity
Sma3	Zinc finger, RING-type	IPR001841	-	-
Sma3	Zinc finger, PHD-type	IPR001965	-	-
Sma3	Zinc finger, RING-type, conserved site	IPR017907	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q8L7I1

Fln msg: Distance to subject end: 24 aas, your sequence is shorter than subject: 101 - 984

Fln protein: CEKDKLNSNSEIKGKVSLTSHAEGDTSKKDSEVGWKKQHPDMRHFIRKKVEAYIKEHIRPLCKSGVVTVEQYRWAVGKTVEKVMKYHRNTKSADFLITEGN

Protein Length: 102

Fln nts: AATGTGAGAAAGATAAACTCAATAGCAATTCTGAAATAAAGGGAAAGGTCTCTTTAACTTCTCATGCTGAAGGTGATACTTCAAAGAAAGATTCAGAAGTGGGCTGGAAAAAGCAGCACCCTGACATGAGACATTTTATCCGGAAGAAGGTGGAGGCATACATCAAGGAACATATAAGACCTCTCTGTAAAAGTGGGGTAGTTACAGTAGAGCAGTATCGATGGGCTGTTGGTAAGACAGTCGAGAAGGTTATGAAATATCATCGTAATACAAAAAGTGCAGATTTCCTTATAACAGAGGGAAAT

Fln Alignment:

Contig4371___IRKKVEAYIKEHIRPLCKSGVVTVEQYRWAVGKTVEKVMKYHRNTKSADFLITEGN
Q8L7I1_________________ITKKVEAYIKEHIRPLCKSGVINVEQYRWAVTKTTEKVMKYHSKAKSANFLIKEGD

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
234	20	80			0.995493

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain