SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene4368

Length: 1119 nt

UniGene Fasta

Ace file of the UniGene biog3_v1.0_unigene4368

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene27834	17/18

Source	Descriptions	Term	Type	Identity
AutoFact	Phosphorylase-like protein protein [Arabidopsis thaliana] gb\|AEE85565.1\| Phosphorylase-like protein protein [Arabidopsis thaliana]	-	-	55%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	57%
Blast2go	bark storage protein a-like	-	-	73%

Source	InterPros	Term	Type	Identity
Sma3	Nucleoside phosphorylase domain	IPR000845	-	-
Sma3	WD40 repeat	IPR001680	-	-
Sma3	U box domain	IPR003613	-	-
Sma3	ATPase, AAA-type, conserved site	IPR003960	-	-
Sma3	Sugar transporter, conserved site	IPR005829	-	-
Sma3	Armadillo-like helical	IPR011989	-	-
Sma3	WD40-repeat-containing domain	IPR017986	-	-
Sma3	Nucleoside phosphorylase	IPR018017	-	-
Sma3		IPR019782	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LL97

Fln msg:

Fln protein: MSPHCYTVIVFPVLMLVIITPLSDACASPKLLRRVQKINQARVHLGLVIPNAYEMDPLLQPPTFIADSNRPYIDISGRRFHMGTVMNHSVIVVMTGLGMINAGITTELLLSFFRVSGVIHYGIAGNANSDFHIGDVTIPRQWAHTGLWSWQRYGKGAKDELPLEENGDYTRELGYLKFSTYNSPQGEDADNLLNNLWYQRDEIFPVNGTPEVREHAFWINVSDSYYKLAEQIEKNVTLEACVNSTCLSHQPRIVRVERGCSANIYVDNAAYRNFIHSKFNVTPVDMESAGIALVCQSQRKPFIIMRALSDLAGGSTEENEAAIFTNLAAVNAVKVVTQFINLL*

Protein Length: 345

Fln nts: GGGGATTCAGAACCACAGTTGCAGTGCACAGCTTCAAGCATAGCG_-_ATGTCTCCGCATTGTTACACTGTCATAGTTTTCCCCGTTCTGATGTTGGTCATAATTACCCCTCTATCCGATGCATGCGCCTCCCCTAAGCTTCTCCGCCGTGTTCAAAAGATCAACCAAGCTCGGGTGCATCTGGGCTTAGTTATTCCCAACGCTTACGAAATGGATCCTCTTCTCCAACCTCCGACTTTTATAGCTGACAGCAACAGGCCTTACATCGATATTTCTGGGAGGAGATTTCACATGGGTACCGTCATGAATCACAGTGTCATTGTGGTGATGACAGGATTGGGGATGATCAACGCAGGAATAACCACTGAGTTGCTTCTTTCTTTCTTTCGAGTGAGCGGAGTTATACACTATGGAATAGCTGGAAATGCAAACTCTGATTTTCACATCGGTGATGTTACCATTCCACGTCAATGGGCACATACAGGCCTATGGAGTTGGCAGAGATATGGAAAAGGAGCGAAGGATGAACTCCCCCTGGAGGAAAATGGTGACTATACTCGTGAGCTTGGCTATCTAAAATTCTCCACGTACAATAGTCCGCAGGGGGAGGACGCCGACAATCTTTTGAATAACTTGTGGTACCAGCGAGACGAGATCTTTCCTGTGAACGGAACCCCAGAAGTCCGAGAACATGCGTTTTGGATCAATGTCTCCGACTCCTACTATAAACTTGCAGAGCAGATCGAAAAGAACGTGACTCTAGAGGCGTGCGTGAACTCCACTTGTCTTTCTCATCAGCCGAGGATTGTGAGAGTGGAGAGAGGATGCAGTGCGAACATTTACGTGGATAATGCCGCTTACAGGAACTTCATTCACTCCAAATTCAATGTAACGCCCGTGGATATGGAGAGTGCAGGGATAGCACTGGTTTGCCAGAGTCAGAGGAAGCCATTCATAATTATGAGAGCTCTGTCTGATTTGGCAGGAGGGTCCACCGAAGAAAACGAAGCTGCGATATTCACTAACTTAGCAGCTGTAAACGCAGTGAAAGTTGTTACCCAATTTATTAATCTACTATGA___TTATGATTAATCTCCATTAATCATATCTAAATAGATCAGTCA

Fln Alignment:

Contig4368___HCYTVIVFPVLMLVIITPLSDACASPKLLRRVQKINQARVHLGLVIPNAYEMDPLLQPPTFIADSNRPYIDISGRRFHMGTVMNHSVIVVMTGLGMINAGITTELLLSFFRVSGVIHYGIAGNANSDFHIGDVTIPRQWAHTGLWSWQRYGKGAKDELPLEENGDYTRELGYLKFSTYNSPQGEDADNLLNNLWYQRDEIFPVNGTPEVREHAFWINVSDSYYKLAEQIEKNVTLEACVNS-TCLSHQPRIVRVERGCSANIYVDNAAYRNFIHSKFNVTPVDMESAGIALVCQSQRKPFIIMRALSDLAGGST-EENEAAIFTNLAAVNAVKVVTQFI
B8LL97_________________HCIWMLIIVTALMVDLSSVDALLPLPKVQRIIRKINRHGPYLGIVVPNAFEMDPLLQSSSFNVSKT---LDVAGRRFHIGSIHKHRVIIVMSGLGMLNSGITTQLLLSFFEVKGVVHYGIAGNANSSLHIGDVTIPRYWAHTGLWNWQRYGDGPSDELSLESNGDYTRQIGYLDFANFTTPSNQSSGNLLNNVWYQPEEVFPVNGTPEVRQHAFWVPVDEHYYQIAKSLE-TLKLEGCLNSTTCLSNTPKAVLVERGSSANVFVDNAAYRNFLYTKFNISPIDMESAAVALVCLEQGLPFIAIRSLSDLAGGGTSESNQAAVFAGLASQNAVTAVIQFI

SNPs (tot: 28)

Position	A %	C %	G %	T %	Probability
523	14		85		0.993533
534	16		83		0.994512
553	83			16	0.994512
561		16	83		0.994512
562	16	83			0.994512
582		80	20		0.995493
585	20		80		0.995493
598		75	25		0.996473
604	25		75		0.996473
606			75	25	0.996473
607			75	25	0.996473
612		66	33		0.997452
621			33	66	0.997452
673		60		40	1.0
684	20	80			0.995493
685		20	80		0.995493
687			80	20	0.995493
688	80			20	0.995493
813	28		71		1.0
814		14		85	0.993533
817	71			28	1.0
876	16			83	0.994512
893			80	20	0.995493
904		20		80	0.995493
905	20		80		0.995493
906			80	20	0.995493
907	75			25	0.996473
938		33		66	0.997452

SSRs (tot: 1)

Start position	End position	Sequence	Length
371	385	TTCT TTCT TTCT TTC	15

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain