SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene4366

Length: 514 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene4366
CCATCATTATGATGGTCCAAAGTTTCGGTTGCAGCTGAATGTTCCAGAGACACTGGCACTCCTGGATATCTGTAGCGAGAATGGACCCCCATAAATAGCACAATGCTTTTATGGTGCCATGAAAAAGTCTTATAATGCGGTATGTTACAGTAAGTATTACATATGAATTTTGGGCTCTGAATCCTCAGATAATGTTTTGTAAAACTGGGGCCGCTCATCCTTCAGAGGACCGATGACGCCATTTTGACTGCTGTGTAAATTTCTATCGCTGGGGATTGAAGTTGAGATGTATACATAGTTTAGCTCATGAATTATCATCATGGCAGCTATATAATATTATAGGAGGGAGTATTTAACCTGCTTTCTGTGGACACTCTTCCAGTAGGAACGGGGTTGCAAATTGTGGCTGTTTGTTAAAAGTAATATGGCAGAACATTTTAACCCTTGGAGATTGAGTAATTACTTCAATAATGCGGTTGGAAAATGTGCTAGTTTGAGCATAATTAAGTGGCAG

Ace file of the UniGene biog3_v1.0_unigene4366 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene21673	6/6

Source	Descriptions	Term	Type	Identity
AutoFact	DCD (Development and Cell Death) domain protein [Arabidopsis thaliana] dbj\|BAB01090.1\| unnamed protein product [Arabidopsis thaliana] gb\|AAL24231.1\| AT3g27090/MOJ10_18 [Arabidopsis thaliana] gb\|AAM65351.1\| AT3g27090/MOJ10_18 [Arabidopsis thaliana] gb\|AEE7	-	-	85%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	93%
Blast2go	dcd (development and cell death) domain protein	-	-	94%

Source	InterPros	Term	Type	Identity
Sma3	Nucleotidyl transferase domain	IPR002934	-	-
Sma3		IPR013089	-	-
Sma3	Development/cell death domain	IPR013989	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5AD32

Fln msg: your sequence is shorter than subject: 31 - 294

Fln protein: HHYDGPKFRLQLNVPETLALLDICSENGPP*

Protein Length: 32

Fln nts: CCATCATTATGATGGTCCAAAGTTTCGGTTGCAGCTGAATGTTCCAGAGACACTGGCACTCCTGGATATCTGTAGCGAGAATGGACCCCCATAA___ATAGCACAATGCTTTTATGGTGCCATGAAAAAGTCTTATAATGCGGTATGTTACAGTAAGTATTACATATGAATTTTGGGCTCTGAATCCTCAGATAATGTTTTGTAAAACTGGGGCCGCTCATCCTTCAGAGGACCGATGACGCCATTTTGACTGCTGTGTAAATTTCTATCGCTGGGGATTGAAGTTGAGATGTATACATAGTTTAGCTCATGAATTATCATCATGGCAGCTATATAATATTATAGGAGGGAGTATTTAACCTGCTTTCTGTGGACACTCTTCCAGTAGGAACGGGGTTGCAAATTGTGGCTGTTTGTTAAAAGTAATATGGCAGAACATTTTAACCCTTGGAGATTGAGTAATTACTTCAATAATGCGGTTGGAAAATGTGCTAGTTTGAGCATAATTAAGTGGCAG

Fln Alignment:

Contig4366___HHYDGPKFRLQLNVPETLALLDICSENGPP
D5AD32_________________HHYDGPKFRLQLNVPETLALMDICNENGPP

SNPs (tot: 12)

Position	A %	C %	G %	T %	Probability
86	25		75		0.996473
87	25	75			0.996473
88		75		25	0.996473
89	75		25		0.996473
193	20	80			0.995493
217	14	71		14	0.984337
218			14	85	0.993533
219	71		14	14	0.984337
241	14	85			0.993533
243	14	85			0.993533
244		85		14	0.993533
245	85			14	0.993533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain