SustainPineDB

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Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene4340

Length: 347 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene4340
GAAGGTTGATTCTAGTAGGATTCTTCAACAGACTATCTGTTATGATAGAGTGCGGCAGGGGTCATTGTCTGTGTCATGGGGCTACAGTGTACATATTTTTGATAGCCTCCAATTCCCGCGTGAACTCGAATCTCCTCAGCAGACCTTCATGCATTGGAGAAAAACTATGACAGATCAGTTTATGTTCAACACTCGTAATGTTTCGAGGAATCCTTGCCTGAGGCCTGCTGTCTTATTTTTGGAAAGTGTTAGCACTGGATCTAAGGGAATCACCACTACCTATACAAGACAAACTGGGGCTAGTTGCCAATTGGGTAAAAGTGCGTTGCAGGCTCTGCAACAACATT

Ace file of the UniGene biog3_v1.0_unigene4340 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene6991	4/4

Source	Descriptions	Term	Type	Identity
AutoFact	transferase, transferring glycosyl groups, putative	-	-	51%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	97%
Blast2go	glycosyltransferase-like protein	-	-	70%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: C0PSX8

Fln msg: Distance to subject end: 47 aas, your sequence is shorter than subject: 115 - 513

Fln protein: KVDSSRILQQTICYDRVRQGSLSVSWGYSVHIFDSLQFPRELESPQQTFMHWRKTMTDQFMFNTRNVSRNPCLRPAVLFLESVSTGSKGITTTYTRQTGASCQLGKSALQALQQH

Protein Length: 116

Fln nts: GAAGGTTGATTCTAGTAGGATTCTTCAACAGACTATCTGTTATGATAGAGTGCGGCAGGGGTCATTGTCTGTGTCATGGGGCTACAGTGTACATATTTTTGATAGCCTCCAATTCCCGCGTGAACTCGAATCTCCTCAGCAGACCTTCATGCATTGGAGAAAAACTATGACAGATCAGTTTATGTTCAACACTCGTAATGTTTCGAGGAATCCTTGCCTGAGGCCTGCTGTCTTATTTTTGGAAAGTGTTAGCACTGGATCTAAGGGAATCACCACTACCTATACAAGACAAACTGGGGCTAGTTGCCAATTGGGTAAAAGTGCGTTGCAGGCTCTGCAACAACATT

Fln Alignment:

Contig4340___KVDSSRILQQTICYDRVRQGSLSVSWGYSVHIFDSLQFPRELESPQQTFMHWRKTMTDQFMFNTRNVSRNPCLRPAVLFLESVSTGSKGITTTYTRQTGASCQLGKSALQALQQ
C0PSX8_________________KVDSSRILQQTICYDKVRQGSLSVSWGYSVHVFDSIQFPRELESPQQTFMHWRKTMTDQFMFNTRNVSRNPCLRPAVLFLESVSTGSKGITTTYTRQTGASCQLGKSALQALQQ

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain