SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene4323

Length: 779 nt

UniGene Fasta

Ace file of the UniGene biog3_v1.0_unigene4323

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene8057	9/12
SustainPine v2.0	sp_v2.0_unigene70310	2/12

Source	Descriptions	Term	Type	Identity
AutoFact	Cysteine synthase n=2 Tax=Picea sitchensis RepID=B8LQB8_PICSI	-	-	81%
FL-Next	sp=Cysteine synthase; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	73%
Blast2go	beta-cyanoalanine synthase	-	-	87%

Source	ECs	Term	Type	e value	Identity
Blast2go	Cysteine synthase.	EC:2.5.1.47	-	0.0	87%

Source	KEGGs	Term	Identity
Blast2go	Cysteine and methionine metabolism	00270	87%
Blast2go	Sulfur metabolism	00920	87%
Blast2go	Metabolic pathways	01100	87%

Source	GOs	Term	Type	Identity
Blast2go	cysteine biosynthetic process from serine	GO:0006535	Biological Process	87%
Blast2go	pyridoxal phosphate binding	GO:0030170	Molecular Function	87%
Blast2go	cysteine synthase activity	GO:0004124	Molecular Function	87%
Blast2go	transferase activity	GO:0016740	Molecular Function	87%

Source	InterPros	Term	Type	Identity
Sma3	Cysteine synthase/cystathionine beta-synthase P-phosphate-binding site	IPR001216	-	-
Sma3	Cysteine synthase K/M	IPR005856	-	-
Sma3	Cysteine synthase A	IPR005859	-	-
Sma3	Pyridoxal phosphate-dependent enzyme, beta subunit	IPR001926	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LQB8

Fln msg: Distance to subject end: 34 aas, your sequence is shorter than subject: 259 - 383

Fln protein: NVTSAASSATELNTNLKDRLTGLNLKKDVSQLIARTPMVHLSKVTEGCVANVVAKLEMMQPCCSVKDRVGYAMILDAEEKGLISPEKSVLVEPTSGNMGIALSYIAASRGYKLVLTMPSYTSLERRVTMRAFGSDLVLTDPVKGMGGAVKKAADLLDKTPNAFMLQQFENPANVKTHFETTGPEIWEDTAGQVDIFVMGIGSGGTVSGVGRYLKSKNPNVKIYGARELATKEGLMVGISSGANTVAAIQLAKRPENKNK

Protein Length: 260

Fln nts: AATGTTACTTCTGCTGCTTCTTCTGCAACAGAACTCAACACCAACTTGAAGGACAGGCTAACTGGCCTTAACTTGAAGAAGGATGTGTCTCAGTTGATAGCAAGAACCCCCATGGTACATCTGAGCAAAGTAACTGAGGGCTGTGTGGCTAACGTAGTGGCCAAACTGGAAATGATGCAACCTTGTTGCAGTGTCAAGGACAGGGTTGGATATGCCATGATTCTGGACGCTGAGGAGAAAGGACTCATTTCGCCAGAGAAGAGTGTATTGGTGGAGCCAACATCTGGAAATATGGGAATCGCGTTGTCTTATATTGCTGCGAGCAGGGGATACAAACTTGTGCTCACAATGCCCTCATACACAAGCTTGGAAAGACGAGTGACCATGCGTGCCTTCGGCTCTGACCTTGTTCTCACAGATCCTGTAAAAGGCATGGGGGGTGCTGTTAAGAAGGCGGCTGACCTTCTGGACAAAACCCCCAATGCATTCATGCTTCAGCAGTTTGAGAATCCTGCTAATGTCAAGACGCATTTTGAGACCACGGGACCTGAGATCTGGGAAGACACTGCAGGCCAAGTTGATATATTCGTGATGGGAATTGGGAGCGGTGGTACTGTGTCGGGAGTTGGTAGATACCTGAAGAGCAAAAATCCCAATGTCAAGATTTATGGAGCGCGAGAGCTAGCTACGAAGGAAGGCCTCATGGTTGGAATTTCTTCTGGTGCCAACACAGTTGCAGCAATTCAATTAGCAAAAAGGCCAGAGAATAAAAACAAACT

Fln Alignment:

Contig4323___NVTSAASSATELNTNLKDRLTGLNLKKDVSQLIARTPMVHLSKVTEGCVANVVAKLEMMQPCCSVKDRVGYAMILDAEEKGLISPEKSVLVEPTSGNMGIALSYIAASRGYKLVLTMPSYTSLERRVTMRAFGSDLVLTDPVKGMGGAVKKAADLLDKTPNAFMLQQFENPANVKTHFETTGPEIWEDTAGQVDIFVMXXXXXXXXXXXXRYLKSKNPNVKIYG--------------------------------------------------ARELATKEGLMVGISSGANTVAAIQLAKRPENKNK
B8LQB8_________________SVAASSSSATQLNTN--DRLAGLNLKKDVSQLMARTPIVYLNKVTEGCGAYVAAKLEMMQPCCSIKDRVGYAMILDAEEKGLISPEKSVLVEPTSGNMGISLAYIAASRGYKLVLTMPSYTSLERRVTMRAFGSELVLTDPVKGMGGAIKKAADLLQTIPNAFMLQQFDNPANVKAHFESTGPEIWEDTAGQVDIFVMGIGSGGTVSGVGRYLKSKNPNVKIYGLEPAESNVLNGGKPGPHQITGTGVGFAPKILDLDILDGVIEVSSDDALKMARELAWKEGLMVGISSGANTVGALQLARKPENKNK

SNPs (tot: 11)

Position	A %	C %	G %	T %	Probability
8	33	66			0.997452
112	25	75			0.996473
136		25		75	0.996473
174		14		85	0.993533
175	14		85		0.993533
176	85			14	0.993533
308	14			85	0.993533
309	14	85			0.993533
343	12		87		0.992554
508		20	80		0.995493
510	80			20	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain