SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene4317

Length: 1209 nt

UniGene Fasta

Ace file of the UniGene biog3_v1.0_unigene4317

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene1169	21/22
SustainPine v2.0	sp_v2.0_unigene62390	1/22

Source	Descriptions	Term	Type	Identity
AutoFact	ATP-binding cassette transporter n=2 Tax=Selaginella moellendorffii RepID=D8S2N6_SELML	-	-	63%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	67%
Blast2go	atp-binding cassette transporter	-	-	77%

Source	GOs	Term	Type	Identity
Blast2go	ATPase activity, coupled to transmembrane movement of substances	GO:0042626	Molecular Function	77%
Blast2go	substrate-specific transmembrane transporter activity	GO:0022891	Molecular Function	77%
Blast2go	nucleotide binding	GO:0000166	Molecular Function	77%
Blast2go	membrane	GO:0016020	Cellular Component	77%

Source	InterPros	Term	Type	Identity
Sma3	Ribosomal protein L11	IPR000911	-	-
Sma3	DNA methylase, N-6 adenine-specific, conserved site	IPR002052	-	-
Sma3	Proteinase inhibitor I2, Kunitz metazoa	IPR002223	-	-
Sma3	ABC transporter-like	IPR003439	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	ATPase, AAA-type, core	IPR003959	-	-
Sma3	Pleiotropic drug resistance protein PDR	IPR005285	-	-
Sma3	Phosphopantetheine attachment site	IPR006162	-	-
Sma3	ABC-2 type transporter	IPR013525	-	-
Sma3	Plant PDR ABC transporter associated	IPR013581	-	-
Sma3	ABC transporter, conserved site	IPR017871	-	-
Sma3	Peptidase S26A, signal peptidase I, serine active site	IPR019756	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: D5ACV1

Fln msg: Separated hits, possible frame ERROR between 851 and 917, Unexpected STOP codon at 3' end. Distance to subject end: 19 aas, your sequence is shorter than subject: 385 - 412

Fln protein: MRTVRNTVDTGRTVVCTIHQPSIDIFESFDELVLMKRGGQMIYVGPLGHQSQALVDYLEAIEGVPKITAGYNPATWMLEVTSVTSAIRLGVDFAEIYKNSSLYQRNEALIQEISKPVPGSNDLSFERQFAQPFAVQTMACLWKQHWSYWRNPQYNSVRFLFTLACGLLFGTAFWRMGRKTHRQQDILNAMGSMFAAILFLGFSNVVSVLPVVDVERTVFYREKAAGMYSALPYALAQLLIEIPYVFVQAVVYGLLVYALIDFRWTAAKFFWxxxxxxxxxxxxxxxxxxxxxxxPNSSIASVLSTGFIAIWMVFCGFLIPRPRIPVWWRWYYWVSPFAWTLYGLIASQFGDNSDEMVMNDGTKQQVNTFLRSHFGYRHVFLWDQ*

Protein Length: 386

Fln nts: CATCCGGACTGGATGCAAGAGCTGCAGCTATTGTT_-_ATGAGAACAGTTCGAAACACAGTTGATACTGGACGAACTGTGGTTTGCACCATTCATCAGCCCAGCATTGATATATTCGAGTCCTTCGATGAGCTGGTGTTGATGAAACGTGGAGGACAGATGATCTATGTTGGACCTCTTGGTCACCAATCCCAAGCACTTGTGGACTACTTGGAGGCAATTGAAGGTGTACCGAAAATTACAGCTGGTTACAACCCTGCTACATGGATGTTGGAAGTAACCTCTGTCACTTCAGCTATTCGGCTTGGAGTTGATTTTGCTGAAATCTATAAAAATTCATCCCTCTATCAACGTAATGAAGCTCTAATTCAGGAAATTAGCAAACCTGTTCCTGGCTCCAACGATTTGAGCTTCGAAAGACAATTCGCTCAACCCTTTGCAGTTCAAACTATGGCTTGTCTATGGAAGCAGCATTGGTCTTATTGGCGAAATCCTCAGTACAACAGCGTTCGATTCCTCTTCACCCTTGCCTGTGGTTTGCTTTTTGGCACCGCTTTCTGGAGAATGGGCCGGAAAACGCACAGGCAACAAGATATATTGAATGCGATGGGATCCATGTTCGCCGCAATTCTCTTCCTAGGCTTCAGCAATGTTGTCTCTGTACTACCAGTGGTCGACGTCGAAAGAACGGTCTTCTATAGAGAAAAGGCAGCAGGAATGTACTCCGCTCTGCCCTATGCCCTTGCTCAGCTTTTGATCGAAATACCATACGTATTTGTGCAAGCGGTAGTGTACGGTCTGCTCGTTTATGCATTGATCGACTTCCGGTGGACAGCGGCCAAATTCTTTTGGTAxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxTCCCAATTCAAGCATAGCTTCAGTTCTCTCCACCGGTTTCATCGCAATCTGGATGGTCTTCTGCGGCTTCTTAATTCCACGTCCGCGGATTCCTGTGTGGTGGAGATGGTATTATTGGGTTTCCCCCTTTGCATGGACTCTATATGGACTGATAGCGTCTCAGTTCGGGGATAACTCAGATGAAATGGTGATGAACGATGGTACAAAACAACAAGTGAACACATTCCTGAGGAGCCACTTTGGATATAGGCACGTATTTTTATGGGACCAGTAGCGGTTGCCACAATGTACATT

Fln Alignment:

Contig4317___MRTVRNTVDTGRTVVCTIHQPSIDIFESFDELVLMKRGGQMIYVGPLGHQSQALVDYLEAIEGVPKITAGYNPATWMLEVTSVTSAIRLGVDFAEIYKNSSLYQRNEALIQEISKPVPGSNDLSFERQFAQPFAVQTMACLWKQHWSYWRNPQYNSVRFLFTLACGLLFGTAFWRMGRKTHRQQDILNAMGSMFAAILFLGFSNXXXXXXXXXXERTVFYREKAAGMYSALPYALAQLLIEIPYVFVQAVVYGLLVYALIDFRWTAAKFFWYxxxxxxxxxxxxxxxxxxxxxxPNSSIASVLSTGFIAIWMVFCGFLIPRPRIPVWWRWYYWVSPFAWTLYGLIASQFGDNSDEM-VMNDGTKQQVNTFLRSHFGYRHVFL
D5ACV1_________________MRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYAGPVGHHSYKLIEYFEAIPGVPKIRDGYNPATWMLEISSPAAETHLGVDFAEVYSNSPLFQRNQALIKELSTPVPGSRDLYFPTKYSQSFRVQCIACLWKQHWSYWRNPTYNVVRFFFTTVTALLFGSIFWGLGSKTYKQQDLFNVLGAMYASTIFLGVSNSSTVQPVVGVQRTVFYREKAAGMYSAIPYAVAQTAIEIPYILIQTTIYSLIVYSMIDFQWTTVKFFWFxxxxxxxxxxxxxxxxxxxxxxPGHQIAAIVSSFFYGFWNIFSGFLITRPQIPVWWRWYYWANPVAWTLYGLITSQLGDLTGFVEVAGEKDTMSVQQFLEGYFGYRHDFL

SNPs (tot: 27)

Position	A %	C %	G %	T %	Probability
872	18			81	0.999994
873	18	81			0.999994
875	81		18		0.999994
876		81		18	0.999994
910	10		90		0.90298
925		90	10		0.90298
929			10	90	0.90298
936		10		90	0.90298
944		10	90		0.90298
955		90	10		0.90298
962	90	10			0.90298
972	10		90		0.90298
973		10	90		0.90298
976			90	10	0.90298
977	11		88		0.923564
979		88		11	0.923564
992	11			88	0.923564
1012	11			88	0.923564
1014	12	87			0.992554
1036		20		60	0.99255
1038	25		75		0.996473
1039		25	75		0.996473
1040	25		75		0.996473
1041		25		75	0.996473
1120		25		75	0.996473
1121	25		75		0.996473
1122			75	25	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain