SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene4315

Length: 1124 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog3_v1.0_unigene4315 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene560	25/26

Source	Descriptions	Term	Type	Identity
AutoFact	splicing factor 3B subunit 3 [Arabidopsis thaliana] ref\|NP_567016.1\| putative splicing factor [Arabidopsis thaliana] emb\|CAB75754.1\| spliceosomal-like protein [Arabidopsis thaliana] emb\|CAB75756.1\| spliceosomal-like protein [Arabidopsis thaliana] gb\|AEE79	-	-	77%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	97%
Blast2go	protein	-	-	90%

Source	GOs	Term	Type	Identity
Blast2go	nucleic acid binding	GO:0003676	Molecular Function	90%
Blast2go	nucleus	GO:0005634	Cellular Component	90%
Blast2go	chloroplast	GO:0009507	Cellular Component	90%

Source	InterPros	Term	Type	Identity
Sma3	Reverse transcriptase	IPR000477	-	-
Sma3	WD40 repeat	IPR001680	-	-
Sma3	Peptidase aspartic, active site	IPR001969	-	-
Sma3	Immunoglobulin/major histocompatibility complex, conserved site	IPR003006	-	-
Sma3	Cleavage/polyadenylation specificity factor, A subunit, C-terminal	IPR004871	-	-
Sma3	Retrotransposon gag protein	IPR005162	-	-
Sma3	Retroviral aspartyl protease	IPR013242	-	-
Sma3	MULE transposase domain	IPR018289	-	-

Full-Lengther Next Prediction

SNPs (tot: 15)

Position	A %	C %	G %	T %	Probability
367	14	85			0.993533
380			85	14	0.993533
381	85		14		0.993533
404	85		14		0.993533
431	14		85		0.993533
433			14	85	0.993533
515		85		14	0.993533
556	11		88		0.923564
569	11	88			0.923564
573			88	11	0.923564
926	14		85		0.993533
987		14		85	0.993533
990	85			14	0.993533
1107	33			66	0.997452
1111		66		33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain