SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene4313

Length: 818 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog3_v1.0_unigene4313 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene5020	7/7

Source	Descriptions	Term	Type	Identity
AutoFact	Predicted protein n=2 Tax=Physcomitrella patens RepID=A9TAE9_PHYPA	-	-	38%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	85%
Blast2go	protein	-	-	55%

Source	InterPros	Term	Type	Identity
Sma3	Peptidase aspartic, active site	IPR001969	-	-
Sma3	Ankyrin repeat	IPR002110	-	-
Sma3	Transcription factor, SBP-box	IPR004333	-	-
Sma3	Zinc ribbon, NADH pyrophosphatase	IPR015376	-	-
Sma3	Squamosa promoter-binding protein	IPR017238	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-

Full-Lengther Next Prediction

SNPs (tot: 10)

Position	A %	C %	G %	T %	Probability
186	20	80			0.995493
187	20	80			0.995493
189		80		20	0.995493
347		16		16	0.988813
348	83		16		0.994512
404		25		75	0.996473
406	75			25	0.996473
407			75	25	0.996473
568		33		66	0.997452
569	33			66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain