SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene4309

Length: 246 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene4309
GGCACAACACCGATATGCAATATTGCCATTGATTTCCCTTCTCTGGAGAAAAATATAAGAAACCACTGGAATCAACTTGTGCACAATTTGACTTGGAATGTGAGAAAGATGTTAATAGATATGGATCAAGATCTTTTCGAGGATTGCCAACGTAGGTTCCATGAAGAGGAAACAAAGGCAATACGCATACAAGAGCAGCGTGAAATGACATGGAAACGTTTGGAAGCAGTTGCTGCTTCAAAAGCT

Ace file of the UniGene biog3_v1.0_unigene4309 (antisense)

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene4331	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	Protein phosphatase 2a, regulatory subunit, putative n=1 Tax=Ricinus communis RepID=B9SH46_RICCO	-	-	74%
FL-Next	sp=Serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' beta isoform; Arabidopsis thaliana (Mouse-ear cress).	-	-	51%
Blast2go	protein	-	-	84%

Source	GOs	Term	Type	Identity
Blast2go	protein phosphorylation	GO:0006468	Biological Process	84%
Blast2go	transcription initiation from RNA polymerase II promoter	GO:0006367	Biological Process	84%
Blast2go	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	84%
Blast2go	signal transduction	GO:0007165	Biological Process	84%
Blast2go	protein phosphatase type 2A regulator activity	GO:0008601	Molecular Function	84%
Blast2go	protein kinase activity	GO:0004672	Molecular Function	84%
Blast2go	DNA binding	GO:0003677	Molecular Function	84%
Blast2go	ATP binding	GO:0005524	Molecular Function	84%
Blast2go	sequence-specific DNA binding transcription factor activity	GO:0003700	Molecular Function	84%
Blast2go	RNA polymerase II transcription factor activity	GO:0003702	Molecular Function	84%
Blast2go	protein phosphatase type 2A complex	GO:0000159	Cellular Component	84%

Source	InterPros	Term	Type	Identity
Sma3	Platelet-derived growth factor (PDGF)	IPR000072	-	-
Sma3	Glycoside hydrolase, chitinase active site	IPR001579	-	-
Sma3	Protein phosphatase 2A, regulatory B subunit, B56	IPR002554	-	-
Sma3	SecE subunit of protein translocation complex	IPR005807	-	-

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: sp_plants

Fln subject: O04376

Fln msg: STOP codon was not found. Distance to subject end: 12 aas, your sequence is shorter than subject: 82 - 499

Fln protein: GTTPICNIAIDFPSLEKNIRNHWNQLVHNLTWNVRKMLIDMDQDLFEDCQRRFHEEETKAIRIQEQREMTWKRLEAVAASKA

Protein Length: 83

Fln nts: GGCACAACACCGATATGCAATATTGCCATTGATTTCCCTTCTCTGGAGAAAAATATAAGAAACCACTGGAATCAACTTGTGCACAATTTGACTTGGAATGTGAGAAAGATGTTAATAGATATGGATCAAGATCTTTTCGAGGATTGCCAACGTAGGTTCCATGAAGAGGAAACAAAGGCAATACGCATACAAGAGCAGCGTGAAATGACATGGAAACGTTTGGAAGCAGTTGCTGCTTCAAAAGCT

Fln Alignment:

Contig4309___IAIDFPSLEKNIRNHWNQLVHNLTWNVRKMLIDMDQDLFEDCQRRFHEEETKAIRIQEQREMTWKRLEAVAASK
O04376_________________LPIIYPTLEKNIQSHWNQAVHGLTTNIKKMFMEMDPELFEECQRQYEEKQAKSKEVEEQRQYTWKRLAEAAAER

SNPs (tot: 3)

Position	A %	C %	G %	Probability
62	33	66		0.997452
63	33		66	0.997452
65	66		33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain