SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene4278

Length: 295 nt

UniGene Fasta

>biog3_v1.0_unigene4278
AATGTATAATAGCACGGAGCATGGTGAACCTGGCTGGTGGAAGGAACAATTTAATTGTGCAGATGAGGATGGTGATGGAGTTTTGAATCACACTGAGTTTTATAACTTTTTGCATCCTGGAGATAGTAAGAATGAGAAGCTACTTCAGTGGATGTGCAAAGAAAGAATTAGAGAGCGGGATCAAGATAAAGTATGGCAAACTCAACTTTGAAGAATTTGATCATGGGGCATATGAACTCGTTAAGCAGTATGATGAATATGATACCAGGCCTACAAACATCACTGGACATACATT

Ace file of the UniGene biog3_v1.0_unigene4278

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene5720	3/3

Source	Descriptions	Term	Type	Identity
AutoFact	EF-hand, calcium binding motif-containing protein [Arabidopsis thaliana] dbj\|BAB10007.1\| unnamed protein product [Arabidopsis thaliana] gb\|AAL24286.1\| Unknown protein [Arabidopsis thaliana] gb\|AAN15353.1\| Unknown protein [Arabidopsis thaliana] gb\|AED91325	-	-	47%
FL-Next	tr=Putative uncharacterized protein; Selaginella moellendorffii (Spikemoss).	-	-	66%
Blast2go	protein	-	-	67%

Source	GOs	Term	Type	e value	Identity
Blast2go	plasma membrane	GO:0005886	Cellular Component	0.0	67%

Source	InterPros	Term	Type	Identity
Sma3	Calcium-binding EF-hand	IPR002048	-	-
Sma3	EF-hand-like domain	IPR011992	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-
Sma3	EF-hand	IPR018248	-	-
Sma3	EF-HAND 2	IPR018249	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: D8S4Q5

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 87 aas, your sequence is shorter than subject: 70 - 380

Fln protein: MYNSTEHGEPGWWKEQFNCADEDGDGVLNHTEFYNFLHPGDSKNEKLLQWMCKERIRERDQDKVWQTQL*

Protein Length: 71

Fln nts: AATGTATAATAGCACGGAGCATGGTGAACCTGGCTGGTGGAAGGAACAATTTAATTGTGCAGATGAGGATGGTGATGGAGTTTTGAATCACACTGAGTTTTATAACTTTTTGCATCCTGGAGATAGTAAGAATGAGAAGCTACTTCAGTGGATGTGCAAAGAAAGAATTAGAGAGCGGGATCAAGATAAAGTATGGCAAACTCAACTTTGAAGAATTTGATCATGGGGCATATGAACTCGTTAAGCAGTATGATGAATATGATACCAGGCCTACAAACATCACTGGACATACATT

Fln Alignment:

Contig4278___STEHGEPGWWKEQFNCADEDGDGVLNHTEFYNFLHPGDSKNEKLLQWMCKERIRERDQDK
D8S4Q5_________________STDHGEPGWWKEHFDMADANGDGFLNHTEFNDFLHPEDSRNPKLHHWLRREQIRESDHDK

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain