SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene4264

Length: 882 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog3_v1.0_unigene4264 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene28750	6/6

Source	Descriptions	Term	Type	Identity
AutoFact	Protein binding protein, putative n=1 Tax=Ricinus communis RepID=B9T7C4_RICCO	-	-	44%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	91%
Blast2go	protein binding	-	-	61%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: C0PS55

Fln msg: Overlapping hits, possible frame ERROR between 70 and 67, Distance to subject end: 45 aas, your sequence is shorter than subject: 294 - 829

Fln protein: STRYGQVQIPVHAFGFGIDHDxxxMHAISEVSGGTFSFIQAESLVQDAFAQCIGGLLSVVVQDVRVTVSACTGTKLKSFHAGSYETCVTEDGGHGTVNLGDLYAEEERDILVELKLPAVKSASNPMNVISVSCFFKDPVSQRSFHSREQSFSILRPETTGGAPIALNLEVEKERNRLRTAQAIAEARTLADQGEMSGAQTVLQNAKIELQQTRTGDHSLSLALEAEITEIQARMTNKQTYERSGRAFVLSAQSSHFRQRATTRGESFESYSREYQTPSMADMVMRSQTLSATAS

Protein Length: 295

Fln nts: AAGCACGCGTTATGGCCAAGTTCAAATCCCCGTCCATGCCTTCGGCTTCGGAATAGACCACGACxxxxxxxxxATGCACGCTATTTCTGAAGTATCCGGGGGTACGTTTTCGTTCATTCAGGCCGAAAGCCTCGTGCAAGACGCCTTCGCTCAGTGCATCGGCGGCTTACTCAGTGTCGTCGTACAGGACGTCCGAGTAACGGTTTCGGCGTGCACAGGAACAAAGCTGAAAAGTTTCCATGCCGGAAGCTATGAAACCTGCGTTACTGAGGATGGAGGCCACGGGACGGTAAATCTCGGTGACCTCTACGCCGAAGAAGAGAGAGATATACTCGTAGAACTCAAGCTTCCAGCCGTGAAATCTGCATCAAACCCTATGAATGTAATCTCTGTCAGTTGCTTCTTCAAAGACCCCGTCTCGCAGCGAAGTTTCCATTCAAGAGAGCAATCTTTTTCAATTTTGCGTCCGGAGACCACGGGCGGAGCTCCAATTGCCCTAAATTTGGAAGTGGAGAAGGAAAGGAACCGTCTCAGAACAGCTCAAGCAATAGCCGAGGCAAGAACGCTGGCCGATCAGGGTGAGATGTCAGGTGCACAGACTGTTCTTCAAAACGCCAAAATTGAATTGCAGCAGACTCGAACCGGCGACCACTCTCTTTCCCTTGCACTGGAGGCAGAAATTACAGAGATTCAAGCGAGGATGACGAACAAACAAACCTACGAGCGATCCGGGCGGGCGTTTGTGCTTTCAGCTCAGAGTTCCCATTTTCGACAGAGAGCCACAACGCGTGGCGAAAGCTTCGAGAGCTACAGCAGGGAATACCAGACGCCTTCCATGGCGGACATGGTTATGCGTTCCCAAACCCTCTCGGCTACGGCATCA

Fln Alignment:

Contig4264___STRYGQVQIPVHAFGFGIDHDAxTMHAISEVSGGTFSFIQAESLVQDAFAQCIGGLLSXXXXXXXXXVSACTGTKLKSFHAGSYETCVTEDGGHGTVNLGDLYAEEERDILVELKLPAVKSASNPMNVISVSCFFKDPVSQRSFHSREQSFSILRPETTGGAPIALNLEVEKERNRLRTAQAIAEARTLADQGEMSGAQTVLQNAKIELQQTRTGDHSLSLALEAEITEIQARMTNKQTYERSGRAFVLSAQSSHFRQRATTRGESFESYSREYQTPSMADMVMRSQTLSATAS
C0PS55_________________STRYGHVQIPVHAFGFGVDHDAxTMHAISEVSGGTFSFIQAESLVQDAFAQCIGGLLSVVVQDVRVTVSACAGTKLKSFHAGSYETCVAEDGSHGTVNLGDLYAEEERDILVELKFPAVKSASNPMNLISVGCFFKDPVSQRSFHSREQSFSILRPESTDGLPVALNLEVEKERNRLRTAQAIAEARTLADQGDMSGAQRVLQNAKIELQQTRTGDHSLSLALEAEITEIQARMTNIQTYERSGRAFVLSAQSSHFRQRATTRGESFESYSREYQTPSMADMVMRSQTLSATAS

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain