SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene4253

Length: 519 nt

UniGene Fasta

>biog3_v1.0_unigene4253
GAAGGTGTATGCAATGAATATGGTATGACTCAGGCAGATCTTCAGGGAATATCTACCATTCAAAGGGCATTGCACAAACATCGTGATCAGAAGTTAAATAAAGCAGCTACCTGTATTCAGTGTAAATTTCGTGGTTGGAAAGATCGCAAAGAATTTCTTACTTTGCGTCAGCATGTAGTGAAAATTCAAGCTCATTTCCGAGGACACCAAGTGAGGAAAAAATACAAAACGCTTCTGTGGACTGTTGGAGTAATGGATAAAGCTATATTACGGTGGCGGAGAAAGGGTGTTGGGTTGCGTGGATTTAAGGCTGAGATTCCTGAAGGTATTGAACTGGATGATGAAAATAATGATGATTTTCTGAAGGTTTTCAGGAAGCAGAAGGTGAACTTGGCACTTGATGAAGCAGTTGGTCGTGTAGTGCACATGATTGACTCTCCAGATGCACGCCATCAATATCGACGTATGCTTGAAAGATATCAGCAAGTCAAGGATGAATACCGTGGGCAGATAACTGAA

Ace file of the UniGene biog3_v1.0_unigene4253

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene25049	4/4

Source	Descriptions	Term	Type	Identity
AutoFact	calmodulin-binding transcription activator 4 [Arabidopsis thaliana] sp\|Q9FYG2.1\|CMTA4_ARATH RecName: Full=Calmodulin-binding transcription activator 4; AltName: Full=Ethylene-induced calmodulin-binding protein 4; Short=AtFIN21; Short=EICBP4; AltName: Full	-	-	36%
FL-Next	sp=Calmodulin-binding transcription activator 4; Arabidopsis thaliana (Mouse-ear cress).	-	-	54%
Blast2go	calmodulin-binding transcription activator 4-like	-	-	62%

Source	GOs	Term	Type	e value	Identity
Blast2go	cytosol	GO:0005829	Cellular Component	0.0	62%

Source	InterPros	Term	Type	Identity
Sma3	IQ motif, EF-hand binding site	IPR000048	-	-
Sma3	Ankyrin repeat	IPR002110	-	-
Sma3	Cell surface receptor IPT/TIG	IPR002909	-	-
Sma3	CG-1 DNA-binding domain	IPR005559	-	-
Sma3	Aldehyde dehydrogenase domain	IPR015590	-	-
Sma3	Aldehyde dehydrogenase, N-terminal	IPR016162	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-
Sma3	Peptidase S26A, signal peptidase I, serine active site	IPR019756	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9FYG2

Fln msg: Distance to subject end: 23 aas, your sequence is shorter than subject: 173 - 1016

Fln protein: EGVCNEYGMTQADLQGISTIQRALHKHRDQKLNKAATCIQCKFRGWKDRKEFLTLRQHVVKIQAHFRGHQVRKKYKTLLWTVGVMDKAILRWRRKGVGLRGFKAEIPEGIELDDENNDDFLKVFRKQKVNLALDEAVGRVVHMIDSPDARHQYRRMLERYQQVKDEYRGQITE

Protein Length: 174

Fln nts: GAAGGTGTATGCAATGAATATGGTATGACTCAGGCAGATCTTCAGGGAATATCTACCATTCAAAGGGCATTGCACAAACATCGTGATCAGAAGTTAAATAAAGCAGCTACCTGTATTCAGTGTAAATTTCGTGGTTGGAAAGATCGCAAAGAATTTCTTACTTTGCGTCAGCATGTAGTGAAAATTCAAGCTCATTTCCGAGGACACCAAGTGAGGAAAAAATACAAAACGCTTCTGTGGACTGTTGGAGTAATGGATAAAGCTATATTACGGTGGCGGAGAAAGGGTGTTGGGTTGCGTGGATTTAAGGCTGAGATTCCTGAAGGTATTGAACTGGATGATGAAAATAATGATGATTTTCTGAAGGTTTTCAGGAAGCAGAAGGTGAACTTGGCACTTGATGAAGCAGTTGGTCGTGTAGTGCACATGATTGACTCTCCAGATGCACGCCATCAATATCGACGTATGCTTGAAAGATATCAGCAAGTCAAGGATGAATACCGTGGGCAGATAACTGAA

Fln Alignment:

Contig4253___EYGMTQADLQGISTIQRALHKHRDQKLNKAATCIQCKFRGWKDRKEFLTLRQHVVKIQAHFRGHQVRKKYKTLLWTVGVMDKAILRWRRKGVGLRGFKAEIPEGIELDDENNDDFLKVFRKQKVNLALDEAVGRVVHMIDSPDARHQYRRMLERYQQVKDE
Q9FYG2_________________EYGMYCEDIEGISAMSK-LTFGKGRNYNSAALSIQKNFRGYKDRKCFLELRQKVVKIQAHVRGYQIRKNYKVICWAVRILDKVVLRWRRKGVGLRGFRQDVE---STEDSEDEDILKVFRKQKVDVAVNEAFSRVLSMSNSPEARQQYHRVLKRYCQTKAE

SNPs (tot: 9)

Position	A %	C %	G %	T %	Probability
39	33			66	0.997452
40	33	66			0.997452
42			33	66	0.997452
43		66		33	0.997452
252	33			66	0.997452
253	33	66			0.997452
256			66	33	0.997452
349	33		66		0.997452
353			66	33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain