SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene4225

Length: 2282 nt

UniGene Fasta

>biog3_v1.0_unigene4225
AATGTGGGCAATCGTGATCTATACAAGACCTCACAGAAAGGAGGTCAATCGTGATCTATACAAGGACTCACAGAAAGGAGCGGAACTCTTCCTTCCTCTTCCCTCATTTCTTCTGCCACTTTCAAGTGCGCGTGCTTGTCTTTTTGTTCGCTGGGAGATAGTGTGCAGTGGTGATGGCGGCTGTGACAGTGGGTGCATCGATCGGCATCGCTGCTGCTGTGACTAATGGCAATGGCAGCGCCCAGGCCGAGAAGCGCAACGGCCCCTGTAATTTGGGGTTTTGTTCACAGTCGTTAAAGGGAGTGCAAATCCCCACTAAGTTAAACTGGGGGTTAAATACCAGGGGCCGCGGCAGAGGGGGAGCCCTGGGTGCTCACATGGTAGCCGCCCCTCTCACCAAAACGCCTTCGCGCATCGATTTCCAAACCGATGTTTTCAAGAAAGAGAAGGTCACGCTTGCTGGGCAAGATGAGTATATTGTGAGAGGAGGGAGAGATCTGTTCGAGCTGCTCCCCAAGGCTTTCAAAGGCATCAAACAGATCGGAGTCATTGGCTGGGGTTCTCAGGGTCCCGCCCAAGCTCAAAATTTGAGGGATTCTTTGGTAGAAGCAAAATCAGACATTGTAGTGAAGATTGGCTTGAGGAAAGGCTCCAAATCCTTCGCTGAGGCACGTGCAGCAGGATTTTCAGAAGAAAATGGAACTCTTGGTGAAATTATAGAGACTGTATCTGGCAGTGACCTTGTATTACTCCTGATATCTGATGCTGCACAGGCAGACAATTACACAAAAATATTTTCCGCCATGAAACCAAACAGCATTCTTGGTCTCTCTCATGGATTTTTACTGGGACATTTGCAGTCTTGTGGGGATGACTTCCCAAAGAACATTAGTGTGATAGCTGTGTGTCCGAAGGGCATGGGGCCATCTGTGAGGCGCTTGTATGTCCAGGGAAAGCAGATTAATGGTGCAGGAATAAACTCTAGTTTTGCTGTTCATCAGGATGTTGATGGGAGAGCAACAGATGTTGCTTTGGGATGGTCAGTAGCTTTGGGTTCACCATTTACATTTGCAACTACTCTGGAGGATGAATACAGGAGTGATATTTTTGGGGAACGTGGGATCTTATTGGGAGCTGTACATGGTATTGTTGAAGCATTGTTCAGACGATATACTGAAGGTGGAATGGATGAAGAACTTGCTTACAAAAATACAGTGGAAGGTGTAACTGGGATCATATCAAAAACTATCTCAACAAAGGGAATGCTATCTATATACAATTCTCTGAACGAAGAAGAAAAGAGGGATTTTGAGATGGCATACAGTGCTTCATATTACCCTTCCATGGAAATTTTGTATGAGTGCTATGAGGATGTAGCTTCCGGCAACGAGATTCGGAGTGTTGTATTGGCAGGGCGTCGGTTTGTTGAGAAGGATGGGCTACCAGCATTTCCCATGGGTAAGATTGACCAAACACGAATGTGGAAAGTTGGCGAACGTGTTCGTGCAGTGCGGCCTGCTGGGGACTTGGGTCCTCTTTATCCATTTACTGCAGGTGTTTATGTGGCATTAATGATGGCACAGATTGAGATCTTGAGGAAGAAGGGCCATTCATACTCGGAGATAATTAATGAGAGTGTGATTGAAGCCGTGGACTCTTTAAATCCTTTCATGCATGCACGGGGTGTTTCTTTCATGGTTGACAACTGCTCAACAACAGCACGGCTTGGGTCAAGAAAATGGGCCCCTCGATTTGATTATATTTTAACTCAACAAGCTTTTGTGGCTATCGATGCGGGCTCACCCCTTAACAGAGATCTCATAAGTAACTTTCTTTCTGACCCTGTGCACAATGCTATAGAACAATGTGCAAAATTACGCCCGACTGTTGACATAGCAGTCACAGCCAATGCGGATTATGTAAGGCCAGAATTACGGCAGTAAAGTGTACTGACCAAAAAGTGTGGAGTGGTTCTGGAATGCTGCATGTCATATTTGGTGGAAAACTGCATGTCACACTTAGTGGAAAGTGCTATACACTCCAATGCAGTGTATGTTAGGGATCGTTTCTGGCCATTATGGTTCTTTAGCAATTAATTTATCAATCTGAGATGGGTTTTTTAATTGGACCTGCGGACTTTCTTAACAGTAGTTAATGTGCTACATTGTACTAAACTGGTATTGTTATTCTAATTTAACAGACATTGAGTAGATACGATACTCCCTCTGAAGGGTTTTAACTTTAGGTAGTAATAAGAATATCATATACCAGAGTATTTCTTC

Ace file of the UniGene biog3_v1.0_unigene4225

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene17819	172/173
SustainPine v2.0	sp_v2.0_unigene79695	1/173

Source	Descriptions	Term	Type	Identity
AutoFact	Putative ketol-acid reductoisomerase n=1 Tax=Capsicum annuum RepID=B5LAT1_CAPAN	-	-	77%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	93%
Blast2go	ketol-acid reductoisomerase	-	-	89%

Source	GOs	Term	Type	Identity
Blast2go	metabolic process	GO:0008152	Biological Process	89%
Blast2go	response to cadmium ion	GO:0046686	Biological Process	89%
Blast2go	copper ion binding	GO:0005507	Molecular Function	89%
Blast2go	magnesium ion binding	GO:0000287	Molecular Function	89%
Blast2go	NADPH binding	GO:0070402	Molecular Function	89%
Blast2go	protein homodimerization activity	GO:0042803	Molecular Function	89%
Blast2go	catalytic activity	GO:0003824	Molecular Function	89%
Blast2go	cell wall	GO:0005618	Cellular Component	89%
Blast2go	mitochondrion	GO:0005739	Cellular Component	89%
Blast2go	chloroplast envelope	GO:0009941	Cellular Component	89%
Blast2go	chloroplast stroma	GO:0009570	Cellular Component	89%
Blast2go	apoplast	GO:0048046	Cellular Component	89%

Source	InterPros	Term	Type	Identity
Sma3	Acetohydroxy acid isomeroreductase	IPR013023	-	-
Sma3	Acetohydroxy acid isomeroreductase C-terminal	IPR000506	-	-
Sma3	Dehydrogenase, multihelical	IPR013328	-	-
Sma3	Acetohydroxy acid isomeroreductase, catalytic	IPR013116	-	-
Sma3	Ketol-acid reductoisomerase	IPR016206	-	-
Sma3	NAD(P)-binding domain	IPR016040	-	-
Sma3	Phosphopantetheine attachment site	IPR006162	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LR30

Fln msg: Overlapping hits, possible frame ERROR between 1490 and 1414,

Fln protein: MAAVTVGASIGIAAAVTNGNGSAQAEKRNGPCNLGFCSQSLKGVQIPTKLNWGLNTRGRGRGGALGAHMVAAPLTKTPSRIDFQTDVFKKEKVTLAGQDEYIVRGGRDLFELLPKAFKGIKQIGVIGWGSQGPAQAQNLRDSLVEAKSDIVVKIGLRKGSKSFAEARAAGFSEENGTLGEIIETVSGSDLVLLLISDAAQADNYTKIFSAMKPNSILGLSHGFLLGHLQSCGDDFPKNISVIAVCPKGMGPSVRRLYVQGKQINGAGINSSFAVHQDVDGRATDVALGWSVALGSPFTFATTLEDEYRSDIFGERGILLGAVHGIVEALFRRYTEGGMDEELAYKNTVEGVTGIISKTISTKGMLSIYNSLNEEEKRDFEMAYSASYYPSMEILYECYEDVASGNEIRSVVLAxxxxxxxxxxxxxxxxxxxxxxxxxxxANVFVQCGLLGTWVLFIHLLQVFMWH*

Protein Length: 468

Fln nts: AATGTGGGCAATCGTGATCTATACAAGACCTCACAGAAAGGAGGTCAATCGTGATCTATACAAGGACTCACAGAAAGGAGCGGAACTCTTCCTTCCTCTTCCCTCATTTCTTCTGCCACTTTCAAGTGCGCGTGCTTGTCTTTTTGTTCGCTGGGAGATAGTGTGCAGTGGTG_-_ATGGCGGCTGTGACAGTGGGTGCATCGATCGGCATCGCTGCTGCTGTGACTAATGGCAATGGCAGCGCCCAGGCCGAGAAGCGCAACGGCCCCTGTAATTTGGGGTTTTGTTCACAGTCGTTAAAGGGAGTGCAAATCCCCACTAAGTTAAACTGGGGGTTAAATACCAGGGGCCGCGGCAGAGGGGGAGCCCTGGGTGCTCACATGGTAGCCGCCCCTCTCACCAAAACGCCTTCGCGCATCGATTTCCAAACCGATGTTTTCAAGAAAGAGAAGGTCACGCTTGCTGGGCAAGATGAGTATATTGTGAGAGGAGGGAGAGATCTGTTCGAGCTGCTCCCCAAGGCTTTCAAAGGCATCAAACAGATCGGAGTCATTGGCTGGGGTTCTCAGGGTCCCGCCCAAGCTCAAAATTTGAGGGATTCTTTGGTAGAAGCAAAATCAGACATTGTAGTGAAGATTGGCTTGAGGAAAGGCTCCAAATCCTTCGCTGAGGCACGTGCAGCAGGATTTTCAGAAGAAAATGGAACTCTTGGTGAAATTATAGAGACTGTATCTGGCAGTGACCTTGTATTACTCCTGATATCTGATGCTGCACAGGCAGACAATTACACAAAAATATTTTCCGCCATGAAACCAAACAGCATTCTTGGTCTCTCTCATGGATTTTTACTGGGACATTTGCAGTCTTGTGGGGATGACTTCCCAAAGAACATTAGTGTGATAGCTGTGTGTCCGAAGGGCATGGGGCCATCTGTGAGGCGCTTGTATGTCCAGGGAAAGCAGATTAATGGTGCAGGAATAAACTCTAGTTTTGCTGTTCATCAGGATGTTGATGGGAGAGCAACAGATGTTGCTTTGGGATGGTCAGTAGCTTTGGGTTCACCATTTACATTTGCAACTACTCTGGAGGATGAATACAGGAGTGATATTTTTGGGGAACGTGGGATCTTATTGGGAGCTGTACATGGTATTGTTGAAGCATTGTTCAGACGATATACTGAAGGTGGAATGGATGAAGAACTTGCTTACAAAAATACAGTGGAAGGTGTAACTGGGATCATATCAAAAACTATCTCAACAAAGGGAATGCTATCTATATACAATTCTCTGAACGAAGAAGAAAAGAGGGATTTTGAGATGGCATACAGTGCTTCATATTACCCTTCCATGGAAATTTTGTATGAGTGCTATGAGGATGTAGCTTCCGGCAACGAGATTCGGAGTGTTGTATTGGCAxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxGCGAACGTGTTCGTGCAGTGCGGCCTGCTGGGGACTTGGGTCCTCTTTATCCATTTACTGCAGGTGTTTATGTGGCATTAA___TGATGGCACAGATTGAGATCTTGAGGAAGAAGGGCCATTCATACTCGGAGATAATTAATGAGAGTGTGATTGAAGCCGTGGACTCTTTAAATCCTTTCATGCATGCACGGGGTGTTTCTTTCATGGTTGACAACTGCTCAACAACAGCACGGCTTGGGTCAAGAAAATGGGCCCCTCGATTTGATTATATTTTAACTCAACAAGCTTTTGTGGCTATCGATGCGGGCTCACCCCTTAACAGAGATCTCATAAGTAACTTTCTTTCTGACCCTGTGCACAATGCTATAGAACAATGTGCAAAATTACGCCCGACTGTTGACATAGCAGTCACAGCCAATGCGGATTATGTAAGGCCAGAATTACGGCAGTAAAGTGTACTGACCAAAAAGTGTGGAGTGGTTCTGGAATGCTGCATGTCATATTTGGTGGAAAACTGCATGTCACACTTAGTGGAAAGTGCTATACACTCCAATGCAGTGTATGTTAGGGATCGTTTCTGGCCATTATGGTTCTTTAGCAATTAATTTATCAATCTGAGATGGGTTTTTTAATTGGACCTGCGGACTTTCTTAACAGTAGTTAATGTGCTACATTGTACTAAACTGGTATTGTTATTCTAATTTAACAGACATTGAGTAGATACGATACTCCCTCTGAAGGGTTTTAACTTTAGGTAGTAATAAGAATATCATATACCAGAGTATTTCTTC

Fln Alignment:

Contig4225___MAAVTVGASIGIAAAVTNGNGS--AQAEKRNGPCNLGFCSQSLKGVQIPTKLNWGLNTXXXXXXXALGAHMVAAPLTKTPSRIDFQTDVFKKEKVTLAGQDEYIVRGGRDLFELLPKAFKGIKQIGVIGWGSQGPAQAQNLRDSLVEAKSDIVVKIGLRKGSKSFAEARAAGFSEENGTLGEIIETVSGSDLVLLLISDAAQADNYTKIFSAMKPNSIXXXXXXXXXXXXQSCGDDFPKNISVIAVCPKGMGPSVRRLYVQGKQINGAGINSSFAVHQDVDGRATDVALGWSVALGSPFTFATTLEDEYRSDIFGERGILLGAVHGIVEALFRRYTEGGMDEELAYKNTVEGVTGIISKTISTKGMLSIYNSLNEEEKRDFEMAYSASYYPSMEILYECYEDVASGNEIRSVVLAxxxxxxxxxxxxxxxxxxxxxxxxxxANVFVQCGLLGTWVLFIHLLQVFMWH
B8LR30_________________MAAVTGCASISITAAVANGNGSGSAKGEKRNVPCNLGFCSQSLKGMQIPTKLNWGLNTRGRGRGGALGAHMVASPLTKTPSRIDFQTDVFKKEKTTLAGQDEYIVRGGRDLFELLPKAFKGIKQIGVIGWGSQGPAQAQNLRDSLVEAKSDIVVKIGLRKGSKSFAEARAAGFSEENGTLGEMIETVSGSDLVLLLISDAAQADNYTKIFSAMKPNSILGLSHGFLLGHLQSCGDDFPENISVIAVCPKGMGPSVRRLYVQGKQINGAGINSSFAVHQDVDGRATDVALGWSVALGSPFTFATTLEDEYRSDIFGERGILLGAVHGIVEALFRRYTEGGMDEELAYKNTVEGITGIISKTISTKGMLSIYNSLNEEEKGDFEMAYSASYYPCMEILYECYEDVASGNEIRSVVLAxxxxxxxxxxxxxxxxxxxxxxxxxxVNGFVQCGLLVTWVLFIHLLPVFMWH

SNPs (tot: 39)

Position	A %	C %	G %	T %	Probability
50		33	33		0.997753
105	25	75			0.996473
108			25	75	0.996473
205	14		85		0.993533
209		85		14	0.993533
269			66	33	0.997452
270	33			66	0.997452
273			33	66	0.997452
623	9			90	0.999872
624		9		90	0.999872
625	9		90		0.999872
626		9		90	0.999872
628			89	10	0.999919
647	86	13			0.999973
649			86	13	0.999973
650			86	13	0.999973
1606	15		84		1.0
1798	15		84		0.999986
1799		15	84		0.999986
1800	15	84			0.999986
1802		84		15	0.999986
1835	10			90	0.90298
1836		10		90	0.90298
1837	10			90	0.90298
1838		90		10	0.90298
1853	88			11	0.923564
1856	12	87			0.992554
1857		12		87	0.992554
1859		12		87	0.992554
1860	87			12	0.992554
1861			85	14	0.993533
1862	85			14	0.993533
1880	16		83		0.994512
1881		83		16	0.994512
1882		83		16	0.994512
2113		14		85	0.993533
2114	16		83		0.994512
2115			75	25	0.996473
2116			75	25	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain