SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene4210

Length: 290 nt

UniGene Fasta

>biog3_v1.0_unigene4210
AGGGCAAGTTTGGTGCATACTGGGTGGACAAAGGACATATTGTTGGAGTCATTTCTTGAAGGGGGCAGCCAGGATGAATATGCTGCATTGGCAAATGCAACGAGATTAAAGCCATTCGTAAGTGATAGAACTGCACTCTCGAGCCAGGGAGTGGAATTTGCCCTCTCTCTTAAGCAAGCTCCTATGCAGGATTTGGTTGGAGTGATGACTAGTAAAGATAATTTTTGCTTGGGAAAGCACCATATACTTTACACATTACTGCTGGGCTTTTTGTTGCTGTTGCTGTTGCC

Ace file of the UniGene biog3_v1.0_unigene4210

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene26063	3/3

Source	Descriptions	Term	Type	Identity
AutoFact	monodehydroascorbate reductase (NADH) [Arabidopsis thaliana] sp\|Q9LK94.1\|MDAR2_ARATH RecName: Full=Probable monodehydroascorbate reductase, cytoplasmic isoform 2; Short=MDAR 2 dbj\|BAB02528.1\| cytosolic monodehydroascorbate reductase [Arabidopsis thaliana]	-	-	61%
FL-Next	sp=Probable monodehydroascorbate reductase, cytoplasmic isoform 2; Arabidopsis thaliana (Mouse-ear cress).	-	-	84%
Blast2go	monodehydroascorbate reductase	-	-	75%

Source	ECs	Term	Type	e value	Identity
Blast2go	Monodehydroascorbate reductase (NADH).	EC:1.6.5.4	-	0.0	75%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Ascorbate and aldarate metabolism	00053		0.0	75%
Blast2go	Metabolic pathways	01100		0.0	75%

Source	GOs	Term	Type	Identity
Blast2go	hydrogen peroxide catabolic process	GO:0042744	Biological Process	75%
Blast2go	monodehydroascorbate reductase (NADH) activity	GO:0016656	Molecular Function	75%
Blast2go	chloroplast envelope	GO:0009941	Cellular Component	75%
Blast2go	peroxisomal membrane	GO:0005778	Cellular Component	75%

Source	InterPros	Term	Type	Identity
Sma3	Pyridine nucleotide-disulphide oxidoreductase, class-II	IPR000103	-	-
Sma3	Pyridine nucleotide-disulphide oxidoreductase, NAD-binding domain	IPR001327	-	-
Sma3	Peptidase C48, SUMO/Sentrin/Ubl1	IPR003653	-	-
Sma3	Protein BYPASS-related	IPR008511	-	-
Sma3	Nucleic acid-binding, OB-fold	IPR012340	-	-
Sma3	FAD-dependent pyridine nucleotide-disulphide oxidoreductase	IPR013027	-	-
Sma3	Replication factor A, C-terminal	IPR013955	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9LK94

Fln msg: Overlapping hits, possible frame ERROR between 47 and 31, Distance to subject end: 20 aas, your sequence is shorter than subject: 96 - 488

Fln protein: GKFGAYWVDxxxxxxxSFLEGGSQDEYAALANATRLKPFVSDRTALSSQGVEFALSLKQAPMQDLVGVMTSKDNFCLGKHHILYTLLLGFLLLLLL

Protein Length: 97

Fln nts: AGGGCAAGTTTGGTGCATACTGGGTGGACxxxxxxxxxxxxxxxxxxxxxTCATTTCTTGAAGGGGGCAGCCAGGATGAATATGCTGCATTGGCAAATGCAACGAGATTAAAGCCATTCGTAAGTGATAGAACTGCACTCTCGAGCCAGGGAGTGGAATTTGCCCTCTCTCTTAAGCAAGCTCCTATGCAGGATTTGGTTGGAGTGATGACTAGTAAAGATAATTTTTGCTTGGGAAAGCACCATATACTTTACACATTACTGCTGGGCTTTTTGTTGCTGTTGCTGTTGCC

Fln Alignment:

Contig4210___FGAYWVDxxxxxxSFLEGGSQDEYAALANATRLKPFVS-DRTALSSQGVEFA
Q9LK94_________________FGAYWVKxxxxxxSFLEGGTKEEYETISKATQLKPAVTIDLEELEREGLGFA

SNPs (tot: 5)

Position	C %	G %	T %	Probability
111		75	25	0.996473
112	75	25		0.996473
113	75		25	0.996473
202	33	66		0.997452
204		66	33	0.997452

SSRs (tot: 1)

Start position	End position	Sequence	Length
272	289	TGTTGC TGTTGC TGTTGC	18

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain