SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene4207

Length: 687 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog3_v1.0_unigene4207 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene17308	5/5

Source	Descriptions	Term	Type	Identity
AutoFact	Ubiquitin-protein ligase, putative n=1 Tax=Ricinus communis RepID=B9RD12_RICCO	-	-	75%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	98%
Blast2go	protein arabidillo 1-like	-	-	86%

Source	GOs	Term	Type	Identity
Blast2go	lateral root development	GO:0048527	Biological Process	86%
Blast2go	protein binding	GO:0005515	Molecular Function	86%
Blast2go	nucleus	GO:0005634	Cellular Component	86%

Source	InterPros	Term	Type	Identity
Sma3	Armadillo	IPR000225	-	-
Sma3	F-box domain, cyclin-like	IPR001810	-	-
Sma3	Armadillo-like helical	IPR011989	-	-
Sma3		IPR015706	-	-
Sma3	Peroxidases heam-ligand binding site	IPR019793	-	-

Full-Lengther Next Prediction

SNPs (tot: 3)

Position	A %	G %	T %	Probability
344	25	75		0.996473
346	25	75		0.996473
348		75	25	0.996473

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain