SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene4198

Length: 2670 nt

UniGene Fasta

>biog3_v1.0_unigene4198
TAAACCTAGGGTTTCTGTCGGTATTTTGCTATCGCCGGAGTCTATCGTGGCTACTTGTTATCTGGGTTAAAAACACTTTTAATCGAGGGTTTTCCTTGCCGGCAGAGTGTCCTGTTTGTCCTGATTGGGGCGAGGTCGAGGGTTTGAGATTTAGAAAATGACTATGAGCGAGCGGAAGATTATAGAGCTGGAGTCGGGATGGGAATTTATGCAGAAGGGAATTACGAAGCTCAAGAACATTCTGGAAGGAATTCCCGAACAACAATTCAATTCCGAGGAGTACATAATGCTTTACACGACTATTTACAACATGTGCACGCAAAAGCCTCCGCAGGATTATTCGCAACAACTCTATGACAGATACAGGGAGTCTTTTGAAGAGTACATTACTTCGATGGTACTACCTGCATTGAGGGAGAAACATGATGAGTTTATGTTGAGAGAACTTGTAAAGCGATGGGGAAATCACAAATTAATGGTTCAGTGGCTTTCACGTTTCTTTAATTACTTGAATCGTTACTTCATTCCAAGGCGTTCTCTTCCTGCACTAAATGAAGTTGGTCTCATGTGCTTCCGTGATCTGGTTTACCAAGAAATTAAGAATAATGTAAGGGATGCTGTGATTACTCTGATTGATAGGGAACGCGAAGGGGAGCAAATTGATCGAGCTTTGCTGAAAAATGTTCTGGGCATCTTTGTGGAAATTGGGATGGGTAACATGGATGCTTATGAGAATGACTTTGAGTCAGCGATGTTGGATGACACTGCTTCTTACTATTCTCGAAAGGCTGCATCATGGATATTAGAAGATTCTTGTCCGGATTATATGCTTAAGGCTGAGGAGTGTCTGAAACGAGAAAAAGAAAGAGTTTCCCATTATTTACATACTACAAGTGAACAAAAGTTGCTGGAAAAAGTACAAAATGAACTGCTTTCCCAGTATGAGAGTCAACTTCTAGAGAAGGAGCATTCAGGGTGCCATGCCTTGCTAAGAGATGACAAGGTAGATGATCTTTCAAGGATGTATAGGTTGTTTTGTAGGATACCTAAAGGCTTGGAACCCGTGGCTCAAATTTTCAAACAGCATGTTACTGGTGAGGGTACATCATTAGTCAAGCATGCAGAAGATGCGGCAAGCAATAAGAAGGCAGAAAAAAAGGATGTAGTTGGTGCACAAGAGCAGGCATTTGTCAGGAAAGTTATTGAACTGCATGACAAGTACTTGCAATATGTGAACGAGTGTTTTATGAACCACTCCCTTTTCCATAAGGCACTGAAGGAAGCGTTTGAGGTATTTTGTAACAAGGGAGTTGCAGGAAGCACAAGTGCAGAATTATTGGCAACATTTTGTGATAACATCTTGAAGAAGCGTGGTAGTGAAAAATTAAGTGATGAAGATATTGAGGATACGCTTGAAAAGGTTGTCAAGCTTCTGGCATACATTAGTGATAAAGATTTGTTTGCAGAATTTTACAGGAAAAAGCTTGCACGCAGGCTTCTATTTGATAAAAGTGCAAATGATGATCATGAAAGAAGTATATTGACAAAATTGAAGCAACAGTGTGGAGGCCAGTTTACTTCTAAAATGGAGGGAATGGTTACTGATTTAACTTTAGCAAGGGAGAATCAAACAAATTTTGAGGAATATCTTAATGGCAACCCACTTGCACATCCCGGAATAGATTTGACTGTGACTGTTTTGACAACTGGATTTTGGCCAAGTTACAAGTCATTTGACCTTAATCTACCTGCTGAGATGGTTAAATGTGTTGAGGTGTTCAAAGAGTTTTATCAAACAAAAACTAAACATCAGAAGCTTACATGGATATATTCTTTGGGAACCTGTAATATTATTGGGAAGTTTGATCCTAAGCCAATGGAACTTATTGTGACAACTTACCAGGCATCTGCACTTCTGCTGTTCAATGCATCAGAGAGGCTAAGTTACTCTGAAATCAAGTCTCAGTTGAATTTAACTGATGAAGATATTGTCAGATTGCTGCACTCCCTTGCATGTGCAAAATACAAAATCCTCAACAAAGAACCAAACACAAAAACTGTGGCACAAACAGATTATTTTGAATTCAACGCAAAATTTACAGACAAAATGAGGAGAATAAAGATTCCTCTTCCACCAGTGGACGAGAAGAAAAAAGTTATCGAGGATGTAGATAAAGATCGACGTTACGCTATTGACGCATCAATTGTAAGAATCATGAAGAGCCGAAAAGTTTTATCTCACCAGCAGCTAGTGATGGAGTGCGTTGAGCAACTGGGACGGATGTTCAAGCCTGATTTCAAGGCAATCAAGAAGAGAATTGAAGATCTAATTACAAGGGAATACTTGGAGAGGGACAAAGATAATCCTAATATGTTCAGATATTTGGCCTGAACTGTGGGTGCAATGTTGTTTGTACAAGCTTTTTTAAGCTTGCTTCATGCAGCAATTCATCTATTGAATTTCTCCTAGGTGCTTGTATTTATATTATATAGTGCTTCCAATGTTGGCGAAGATCTTATTACAAAGCATCACTGCTCACTCAAACGTTGACGGTTGTAGACATCCTCAGAAATGGGTTTGGCCGCCATGAGGGTTTCCACAGAAGGATATCATGAAACTTCACTGTTTGCTGATATGGTCACTGAGCTTTACATTTTTTAATTTACATT

Ace file of the UniGene biog3_v1.0_unigene4198

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene3739	93/120
SustainPine v2.0	sp_v2.0_unigene15891	23/120
SustainPine v2.0	sp_v2.0_unigene70027	2/120
SustainPine v2.0	sp_v2.0_unigene76924	1/120

Source	Descriptions	Term	Type	e value	Identity
AutoFact	cullin 1-like protein C [Petunia integrifolia subsp. inflata]	-	-	0.0	81%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	97%

Source	InterPros	Term	Type	Identity
Sma3	Cullin, conserved site	IPR016157	-	-
Sma3	Cullin homology	IPR016158	-	-
Sma3	Cullin, N-terminal	IPR001373	-	-
Sma3	Winged helix-turn-helix transcription repressor DNA-binding	IPR011991	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LQB2

Fln msg:

Fln protein: MTMSERKIIELESGWEFMQKGITKLKNILEGIPEQQFNSEEYIMLYTTIYNMCTQKPPQDYSQQLYDRYRESFEEYITSMVLPALREKHDEFMLRELVKRWGNHKLMVQWLSRFFNYLNRYFIPRRSLPALNEVGLMCFRDLVYQEIKNNVRDAVITLIDREREGEQIDRALLKNVLGIFVEIGMGNMDAYENDFESAMLDDTASYYSRKAASWILEDSCPDYMLKAEECLKREKERVSHYLHTTSEQKLLEKVQNELLSQYESQLLEKEHSGCHALLRDDKVDDLSRMYRLFCRIPKGLEPVAQIFKQHVTGEGTSLVKHAEDAASNKKAEKKDVVGAQEQAFVRKVIELHDKYLQYVNECFMNHSLFHKALKEAFEVFCNKGVAGSTSAELLATFCDNILKKRGSEKLSDEDIEDTLEKVVKLLAYISDKDLFAEFYRKKLARRLLFDKSANDDHERSILTKLKQQCGGQFTSKMEGMVTDLTLARENQTNFEEYLNGNPLAHPGIDLTVTVLTTGFWPSYKSFDLNLPAEMVKCVEVFKEFYQTKTKHQKLTWIYSLGTCNIIGKFDPKPMELIVTTYQASALLLFNASERLSYSEIKSQLNLTDEDIVRLLHSLACAKYKILNKEPNTKTVAQTDYFEFNAKFTDKMRRIKIPLPPVDEKKKVIEDVDKDRRYAIDASIVRIMKSRKVLSHQQLVMECVEQLGRMFKPDFKAIKKRIEDLITREYLERDKDNPNMFRYLA*

Protein Length: 746

Fln nts: TAAACCTAGGGTTTCTGTCGGTATTTTGCTATCGCCGGAGTCTATCGTGGCTACTTGTTATCTGGGTTAAAAACACTTTTAATCGAGGGTTTTCCTTGCCGGCAGAGTGTCCTGTTTGTCCTGATTGGGGCGAGGTCGAGGGTTTGAGATTTAGAAA_-_ATGACTATGAGCGAGCGGAAGATTATAGAGCTGGAGTCGGGATGGGAATTTATGCAGAAGGGAATTACGAAGCTCAAGAACATTCTGGAAGGAATTCCCGAACAACAATTCAATTCCGAGGAGTACATAATGCTTTACACGACTATTTACAACATGTGCACGCAAAAGCCTCCGCAGGATTATTCGCAACAACTCTATGACAGATACAGGGAGTCTTTTGAAGAGTACATTACTTCGATGGTACTACCTGCATTGAGGGAGAAACATGATGAGTTTATGTTGAGAGAACTTGTAAAGCGATGGGGAAATCACAAATTAATGGTTCAGTGGCTTTCACGTTTCTTTAATTACTTGAATCGTTACTTCATTCCAAGGCGTTCTCTTCCTGCACTAAATGAAGTTGGTCTCATGTGCTTCCGTGATCTGGTTTACCAAGAAATTAAGAATAATGTAAGGGATGCTGTGATTACTCTGATTGATAGGGAACGCGAAGGGGAGCAAATTGATCGAGCTTTGCTGAAAAATGTTCTGGGCATCTTTGTGGAAATTGGGATGGGTAACATGGATGCTTATGAGAATGACTTTGAGTCAGCGATGTTGGATGACACTGCTTCTTACTATTCTCGAAAGGCTGCATCATGGATATTAGAAGATTCTTGTCCGGATTATATGCTTAAGGCTGAGGAGTGTCTGAAACGAGAAAAAGAAAGAGTTTCCCATTATTTACATACTACAAGTGAACAAAAGTTGCTGGAAAAAGTACAAAATGAACTGCTTTCCCAGTATGAGAGTCAACTTCTAGAGAAGGAGCATTCAGGGTGCCATGCCTTGCTAAGAGATGACAAGGTAGATGATCTTTCAAGGATGTATAGGTTGTTTTGTAGGATACCTAAAGGCTTGGAACCCGTGGCTCAAATTTTCAAACAGCATGTTACTGGTGAGGGTACATCATTAGTCAAGCATGCAGAAGATGCGGCAAGCAATAAGAAGGCAGAAAAAAAGGATGTAGTTGGTGCACAAGAGCAGGCATTTGTCAGGAAAGTTATTGAACTGCATGACAAGTACTTGCAATATGTGAACGAGTGTTTTATGAACCACTCCCTTTTCCATAAGGCACTGAAGGAAGCGTTTGAGGTATTTTGTAACAAGGGAGTTGCAGGAAGCACAAGTGCAGAATTATTGGCAACATTTTGTGATAACATCTTGAAGAAGCGTGGTAGTGAAAAATTAAGTGATGAAGATATTGAGGATACGCTTGAAAAGGTTGTCAAGCTTCTGGCATACATTAGTGATAAAGATTTGTTTGCAGAATTTTACAGGAAAAAGCTTGCACGCAGGCTTCTATTTGATAAAAGTGCAAATGATGATCATGAAAGAAGTATATTGACAAAATTGAAGCAACAGTGTGGAGGCCAGTTTACTTCTAAAATGGAGGGAATGGTTACTGATTTAACTTTAGCAAGGGAGAATCAAACAAATTTTGAGGAATATCTTAATGGCAACCCACTTGCACATCCCGGAATAGATTTGACTGTGACTGTTTTGACAACTGGATTTTGGCCAAGTTACAAGTCATTTGACCTTAATCTACCTGCTGAGATGGTTAAATGTGTTGAGGTGTTCAAAGAGTTTTATCAAACAAAAACTAAACATCAGAAGCTTACATGGATATATTCTTTGGGAACCTGTAATATTATTGGGAAGTTTGATCCTAAGCCAATGGAACTTATTGTGACAACTTACCAGGCATCTGCACTTCTGCTGTTCAATGCATCAGAGAGGCTAAGTTACTCTGAAATCAAGTCTCAGTTGAATTTAACTGATGAAGATATTGTCAGATTGCTGCACTCCCTTGCATGTGCAAAATACAAAATCCTCAACAAAGAACCAAACACAAAAACTGTGGCACAAACAGATTATTTTGAATTCAACGCAAAATTTACAGACAAAATGAGGAGAATAAAGATTCCTCTTCCACCAGTGGACGAGAAGAAAAAAGTTATCGAGGATGTAGATAAAGATCGACGTTACGCTATTGACGCATCAATTGTAAGAATCATGAAGAGCCGAAAAGTTTTATCTCACCAGCAGCTAGTGATGGAGTGCGTTGAGCAACTGGGACGGATGTTCAAGCCTGATTTCAAGGCAATCAAGAAGAGAATTGAAGATCTAATTACAAGGGAATACTTGGAGAGGGACAAAGATAATCCTAATATGTTCAGATATTTGGCCTGA___ACTGTGGGTGCAATGTTGTTTGTACAAGCTTTTTTAAGCTTGCTTCATGCAGCAATTCATCTATTGAATTTCTCCTAGGTGCTTGTATTTATATTATATAGTGCTTCCAATGTTGGCGAAGATCTTATTACAAAGCATCACTGCTCACTCAAACGTTGACGGTTGTAGACATCCTCAGAAATGGGTTTGGCCGCCATGAGGGTTTCCACAGAAGGATATCATGAAACTTCACTGTTTGCTGATATGGTCACTGAGCTTTACATTTTTTAATTTACATT

Fln Alignment:

Contig4198___MTMSERKIIELESGWEFMQKGITKLKNILEGIPEQQFNSEEYIMLYTTIYNMCTQKPPQDYSQQLYDRYRESFEEYITSMVLPALREKHDEFMLRELVKRWGNHKLMVQWLSRFFNYLNRYFIPRRSLPALNEVGLMCFRDLVYQEIKNNVRDAVITLIDREREGEQIDRALLKNVLGIFVEIGMGNMDAYENDFESAMLDDTASYYSRKAASWILEDSCPDYMLKAEECLKREKERVSHYLHTTSEQKLLEKVQNXXXXXXXXXXXXXXHSGCHALLRDDKVDDLSRMYRLFCRIPKGLEPVAQIFKQHVTGEGTSLVKHAEDAASNKKAEKKDVVGAQEQAFVRKVIELHDKYLQYVNECFMNHSLFHKALKEAFEVFCNKGVAGSTSAELLATFCDNILKKRGSEKLSDEDIEDTLEKVVKLLAYISDKDLFAEFYRKKLARRLLFDKSANDDHERSILTKLKQQCGGQFTSKMEGMVTDLTLARENQTNFEEYLNGNPLAHPGIDLTVTVLTTGFWPSYKSFDLNLPAEMVKCVEVFKEFYQTKTKHQKLTWIYSLGTCNIIGKFDPKPMELIVTTYQASALLLFNASERLSYSEIKSQLNLTDEDIVRLLHSLACAKYKILNKEPNTKTVAQTDYFEFNAKFTDKMRRIKIPLPPXXXXXXXXXXXXXXRRYAIDASIVRIMKSRKVLSHQQLVMECVEQLGRMFKPDFKAIKKRIEDLITREYLERDKDNPNMFRYLA
B8LQB2_________________MTMSERKIIELEAGWEFMQKGITKLKNILEGNPEQQINSEEYMMLYTTIYNMCTQKPPQDYSQQLYDRYRESFEEYITSMVLPALREKHDEFMLRELVERWGNHKIMVRWLSRFFNYLDRYFIARRSLPALNEVGLMCFRDLVYQEIKNNVRDAVITLIDREREGEQIDRALLKNVLGIFVEIGMGNMDAYENDFESAMLEDTASYYSRKAASWILEDSCPDYMLKAEECLKREKERVAHYLHSSSEQKLLEKVQNELLSQYESQLLEKEHSGCHALLRDDKVDDLSRMYRLFYRIPKGLEPVSLIFKQHVTGEGTSLVKHAEDAASNKKAEKKDVVGAQEQAFVRKVIELHDKYLQYVNECFMNHSLFHKALKEAFEVFCNKGVAGSTSAELLATFCDNILKKGGSEKLSDEDIEDTLEKVVKLLAYISDKDLFAEFYRKKLARRLLFDKSANDDHERSILTKLKQQCGGQFTSKMEGMVTDLTLARENQTNFEEYLNENPLAHPGIDLTVTVLTTGFWPSYKSFDLNLPAEMVKCVEVFKEFYQTKTKHRKLTWIYSLGTCNIIGKFDPKPMELIVTTYQASALLLFNASERLSYSEIKSQLNLTDEDIVRLLHSLACAKYKILNKEPNTKTVAQTDYFEFNAKFTDKMRRIKIPLPPVDEKKKVIEDVDKDRRYAIDASIVRIMKSRKVLSHQQLVMECVEQLGRMFKPDFKAIKKRMEDLITREYLERDKDNPNMFRYLA

SNPs (tot: 103)

Position	A %	C %	G %	T %	Probability
286	88		11		0.923564
287	88			11	0.923564
318		90	10		0.90298
323	90		10		0.90298
334			80	20	0.999996
346	90		10		0.90298
363	90			10	0.90298
370		11	88		0.923564
371	11			88	0.923564
372		77	11	11	0.968132
379	87	12			0.992554
388			20	70	0.999998
389	80			20	0.999996
396		12		87	0.992554
400	75			25	1.0
406	25			75	1.0
425			87	12	0.992554
430	14		85		0.993533
431		14		85	0.993533
436	14		85		0.993533
437	14			85	0.993533
440	71			14	0.984337
473	40			60	1.0
483	75		25		0.996473
501	25			75	0.996473
545	25	75			0.996473
546	25	75			0.996473
549		75		25	0.996473
565		75		25	0.996473
590		75		25	0.996473
591	25			75	0.996473
612	25			75	0.996473
613	75	25			0.996473
615			75	25	0.996473
616			75	25	0.996473
655	66		33		0.997452
684	33			66	0.997452
700	25			75	0.996473
701	25		75		0.996473
704			75	25	0.996473
706	25		75		0.996473
750		25		75	0.996473
763	66			33	0.997452
798		66		33	0.997452
881	33			66	0.997452
884			33	66	0.997452
894		33	66		0.997452
902		33		66	0.997452
904	33	66			0.997452
911		33		66	0.997452
923		33	66		0.997452
924	33		66		0.997452
939		50		50	1.0
947	50		50		1.0
949		50	50		1.0
994	50		50		1.0
1002	50		50		1.0
1023	50		50		1.0
1032			80	20	0.995493
1045	20		80		0.995493
1048	80		20		0.995493
1049		80		20	0.995493
1066		75		25	0.996473
1102	20		80		0.995493
1103			80	20	0.995493
1188	12	87			0.992554
1191			12	87	0.992554
1235	12		87		0.992554
1236		12		87	0.992554
1237	12		87		0.992554
1238	87			12	0.992554
1239	87			12	0.992554
1285	75		25		0.996473
1328	66			33	0.997452
1329			66	33	0.997452
1815	33		66		0.997452
1877		85		14	0.993533
1946	83	16			0.994512
1947	16		83		0.994512
1985	14			85	0.993533
1986		14	85		0.993533
1988	85			14	0.993533
1989			71	14	0.984337
1991		16		83	0.994512
2012	25	75			0.996473
2013	25	75			0.996473
2054	80		20		0.995493
2055		80		20	0.995493
2068	20		80		0.995493
2071		80		20	0.995493
2072	80			20	0.995493
2199	20			80	0.995493
2202	80			20	0.995493
2203		80		20	0.995493
2251	11		88		0.923564
2400		83		16	0.999991
2430		10		90	0.90298
2553	12		87		0.992554
2576		14	85		0.993533
2578	85			14	0.993533
2579	85			14	0.993533
2633	16			83	0.994512
2654		66		33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain