SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene4189

Length: 475 nt

UniGene Fasta

>biog3_v1.0_unigene4189
TGCATCTTTCTGAAAAGAATGGTGTTTGCCTGCATCTCAACAGTTTCTCTGGTTGCTCTTGGGGTTCAGAAGGATAAGAAAAGCTAGTAGGGATTTCGGGGATGGTTGTGACTGTGGTTATGTATGGTTCTCCACTTTCCGATGCTTGGTCGGTGATAGAGACGAGAAGTGTGGAGTATATGCCCATCCATTTCTCCGTGTTTGCACTGATCAACAGTTGTTTATGGATGATTTACTTCCTTCTCGACAACGACCTCATCCTAGCGTGTCCAAACATAATTGGCGTACCATTGGGCATAGGCCAAATAGTGGTGTATTGTATGTACCGGGAGCAGCCAAGTAATGAAGCAAAGAAAGTGGGTCCATTTGATCCAGAGATTGGGTTGAAAGAGAGGGCAGTTGCAGAGGAAACGGATTCAACAGATGCAGAGGAAACAGGTGAACGGAGCCTGGAAATGGTGCAGATCCAGAAGAT

Ace file of the UniGene biog3_v1.0_unigene4189

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene7793	3/3

Source	Descriptions	Term	Type	Identity
AutoFact	Nodulin MtN3 family protein [Arabidopsis thaliana] sp\|Q6NQN5.1\|SWET3_ARATH RecName: Full=Bidirectional sugar transporter SWEET3; Short=AtSWEET3 gb\|AAQ62417.1\| At5g53190 [Arabidopsis thaliana] dbj\|BAD44103.1\| MtN3 protein-like [Arabidopsis thaliana] gb\|AED	-	-	48%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	40%
Blast2go	nodulin 3 family protein	-	-	65%

Source	GOs	Term	Type	e value	Identity
Blast2go	integral to membrane	GO:0016021	Cellular Component	0.0	65%
Blast2go	plasma membrane	GO:0005886	Cellular Component	0.0	65%

Source	InterPros	Term	Type	Identity
Sma3	RAG1-activating protein-1-related	IPR004316	-	-
Sma3		IPR018169	-	-
Sma3		IPR018179	-	-

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NZG1

Fln msg: Unexpected stop codon in the beginning of your sequence, STOP codon was not found. Distance to subject end: 9 aas, your sequence is shorter than subject: 157 - 272

Fln protein: HLSEKNGVCLHLNSFSGCSWGSEG*EKLVGISGMVVTVVMYGSPLSDAWSVIETRSVEYMPIHFSVFALINSCLWMIYFLLDNDLILACPNIIGVPLGIGQIVVYCMYREQPSNEAKKVGPFDPEIGLKERAVAEETDSTDAEETGERSLEMVQIQK

Protein Length: 158

Fln nts: TGCATCTTTCTGAAAAGAATGGTGTTTGCCTGCATCTCAACAGTTTCTCTGGTTGCTCTTGGGGTTCAGAAGGATAAGAAAAGCTAGTAGGGATTTCGGGGATGGTTGTGACTGTGGTTATGTATGGTTCTCCACTTTCCGATGCTTGGTCGGTGATAGAGACGAGAAGTGTGGAGTATATGCCCATCCATTTCTCCGTGTTTGCACTGATCAACAGTTGTTTATGGATGATTTACTTCCTTCTCGACAACGACCTCATCCTAGCGTGTCCAAACATAATTGGCGTACCATTGGGCATAGGCCAAATAGTGGTGTATTGTATGTACCGGGAGCAGCCAAGTAATGAAGCAAAGAAAGTGGGTCCATTTGATCCAGAGATTGGGTTGAAAGAGAGGGCAGTTGCAGAGGAAACGGATTCAACAGATGCAGAGGAAACAGGTGAACGGAGCCTGGAAATGGTGCAGATCCAGAAGAT

Fln Alignment:

Contig4189___LVGISGMVVTVVMYGSPLSDAWSVIETRSVEYMPIHFSVFALINSCLWMIYFLLDNDLILACPNIIGVPLGIGQIVVYCMYREQPSNEAKKVGPFDPEIGLK
A9NZG1_________________MIGIVGILSSISLYSAPFVAMKLVIQTKSVEFMPFYLSFFAFINCIMWMTYGALSRDIFLATPNVIGSPLALAQLVLYCIYRKK-TRGVQNGNNLDPEEGVQ

SNPs (tot: 3)

Position	A %	G %	T %	Probability
219	33		66	0.997452
220	33	66		0.997452
222		33	66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain