SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene4185

Length: 290 nt

UniGene Fasta

>biog3_v1.0_unigene4185
AATGTCAGATTCACAGAAACTCCTCTTGCAAATCGAGGAGAGAATTCTGGAGTACAGGAATGAAAGCGAGAGGCTTGATCAATGTGTTCGACTTTACGATACTTAAGCCCTAAATGAAGGTTTTGAGCTTGATGCTGCTCGTATATTGCAGGAAATTGGAGTAAACAGCACTGCTATAGACAGAGAGAAGGTGCTACTTCAGGAACTTATGAATACTTCGAGTGGTCTGTTTGGTGCATCTACAGTAACATCAACAAGTTTGTTTGGAGCATCATCTTCGCCATCTACTG

Ace file of the UniGene biog3_v1.0_unigene4185

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene22478	1/3
SustainPine v2.0	sp_v2.0_unigene25985	2/3

Source	Descriptions	Term	Type	e value	Identity
AutoFact	hydroxyproline-rich glycoprotein family protein [Arabidopsis thaliana] gb\|AAM13071.1\| unknown protein [Arabidopsis thaliana] gb\|AAP68318.1\| At4g37130 [Arabidopsis thaliana] gb\|AEE86757.1\| hydroxyproline-rich glycoprotein family protein [Arabidopsis thalia	-	-	2.0e-19	69%
FL-Next	tr=Predicted protein; subsp. trichocarpa).	-	-	0.0	72%
Blast2go	hydroxyproline-rich glycoprotein family protein	-	-	7.73267e-25	82%

Source	GOs	Term	Type	e value	Identity
Blast2go	protein binding	GO:0005515	Molecular Function	7.73267e-25	82%
Blast2go	nuclear envelope	GO:0005635	Cellular Component	7.73267e-25	82%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: B9HEE7

Fln msg: Distance to subject end: 292 aas, your sequence is shorter than subject: 96 - 486

Fln protein: MSDSQKLLLQIEERILEYRNESERLDQCVRLYDT*ALNEGFELDAARILQEIGVNSTAIDREKVLLQELMNTSSGLFGASTVTSTSLFGASSSPST

Protein Length: 97

Fln nts: AATGTCAGATTCACAGAAACTCCTCTTGCAAATCGAGGAGAGAATTCTGGAGTACAGGAATGAAAGCGAGAGGCTTGATCAATGTGTTCGACTTTACGATACTTAAGCCCTAAATGAAGGTTTTGAGCTTGATGCTGCTCGTATATTGCAGGAAATTGGAGTAAACAGCACTGCTATAGACAGAGAGAAGGTGCTACTTCAGGAACTTATGAATACTTCGAGTGGTCTGTTTGGTGCATCTACAGTAACATCAACAAGTTTGTTTGGAGCATCATCTTCGCCATCTACTG

Fln Alignment:

Contig4185___DSQKLLLQIEERILEYRNESERLDQCVRLYDT*ALNEGFELDAARILQEIGVNSTAIDREKVLLQELM
B9HEE7_________________DSQKTLLQIEERILEYRDESKRLDQCSRLYDSSVSNEGFELDASQIIQELGGISTSMERQKALLQELM

SNPs (tot: 4)

Position	A %	C %	G %	T %	Probability
105	50	50			1.0
107			50	50	1.0
108		50	50		1.0
109		50		50	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain