SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene4145

Length: 1857 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog3_v1.0_unigene4145 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene14728	38/42
SustainPine v2.0	sp_v2.0_unigene36403	4/42

Source	Descriptions	Term	Type	Identity
AutoFact	Diaminopimelate decarboxylase, putative n=1 Tax=Ricinus communis RepID=B9RH82_RICCO	-	-	79%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	94%
Blast2go	diaminopimelate decarboxylase	-	-	89%

Source	ECs	Term	Type	e value	Identity
Blast2go		EC:4.1.1.2-	-	0.0	89%

Source	GOs	Term	Type	e value	Identity
Blast2go	diaminopimelate decarboxylase activity	GO:0008836	Molecular Function	0.0	89%
Blast2go	chloroplast	GO:0009507	Cellular Component	0.0	89%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: C0PQH1

Fln msg:

Fln protein: MAATFAASPVSKLSENGSILSNPFKGPAKSFRSSESLVTSRVSIPQRRGEVIRKFSVQCRQGVSSRTFQHCFSKNRDGFMYCEGVRLQDVIDTMERRPFYLYSKPQITRNYEAYENALQGLDSIIGYAVKANNNLKILQHLRSLGSGAVLVSGNELRVALNAGFDPSRCIFNGNGKLLDDLVLAAKEGVLVNIDSEFDLENIVEAARIAKKKVQVLLRINPDVDPEVHPYVATGNKNSKFGIRNEKLQWFLDTVKAHPNELNLVGAHCHLGSTITKVNIFKDAAVLMIQYIDQIRAQGFEIKYLNIGGGLGIDYYHKGEVLPTPKDLINSVRELVLSGNLTLIVEPGRSLVANSGVLVSRVVGVKTNGNKNFIVIDGSMAELIRPSLYGAYQHIELISPPAPKAKIQTFDVVGPVCESADFLGKDRELPTPEMWAGMVVHDAGAYCMSMASTYNLRMRPAEYWIQDDGSVH*IRHAEIFEDHLRYFKGL*

Protein Length: 491

Fln nts: TGGAAACTTTTGAATAGTTTCTCATCAGTCACGACCGCAATCCTAGCTAATTCCATTTAACTCGCCCTGTGTATTTTTAACGTAGACATATCTATCGCTCGAAAGGATTTTGACTTCTGAAAATGTGCCCGCTGATATTGTGCCGAGCTGTGCACAGAGAGTTTGAGTAATTTACTACT_-_ATGGCGGCCACATTTGCAGCTTCACCAGTATCGAAGCTTTCCGAAAATGGCAGCATTCTTTCAAATCCGTTCAAAGGTCCTGCAAAGTCCTTCAGGAGTTCCGAATCTTTGGTTACCTCCCGCGTTTCGATCCCGCAACGTAGGGGCGAGGTTATCAGGAAGTTTTCTGTGCAGTGCCGGCAAGGGGTGTCGTCTAGGACATTCCAGCACTGCTTCAGTAAGAACAGGGACGGGTTCATGTACTGCGAGGGCGTGAGGTTGCAGGATGTCATTGATACGATGGAGAGGAGACCCTTTTATCTCTACAGCAAACCTCAGATCACCAGAAATTACGAGGCTTATGAAAACGCCTTGCAGGGTTTGGATTCCATTATTGGCTATGCTGTAAAAGCGAACAATAATCTCAAGATTTTACAGCATTTGAGGAGCCTTGGCTCTGGAGCAGTCCTCGTCAGTGGGAACGAGTTGAGAGTGGCTCTCAATGCGGGCTTCGATCCTAGCAGGTGTATATTTAATGGAAATGGGAAACTTTTAGATGATCTCGTTTTGGCTGCAAAGGAGGGAGTTTTGGTGAACATAGATAGTGAATTTGATTTGGAGAACATTGTGGAGGCAGCAAGGATTGCGAAGAAGAAGGTCCAAGTACTGCTTCGCATCAATCCAGATGTGGACCCTGAGGTTCACCCATATGTTGCAACTGGAAACAAGAACTCTAAGTTTGGCATCAGAAATGAGAAACTGCAATGGTTTTTAGATACGGTGAAGGCACACCCAAACGAACTGAATCTAGTTGGTGCACATTGTCATCTTGGATCAACAATAACCAAGGTGAACATATTTAAGGATGCTGCAGTTCTAATGATCCAGTATATTGACCAAATACGTGCTCAAGGATTTGAAATTAAGTATCTAAATATTGGAGGAGGCTTAGGCATTGATTACTATCACAAGGGTGAAGTGCTTCCTACCCCTAAGGATCTTATAAATTCTGTAAGAGAGCTGGTATTATCTGGAAATCTTACACTCATTGTTGAGCCGGGGAGATCTCTTGTTGCAAACTCTGGTGTTCTTGTGAGTCGAGTTGTTGGAGTCAAGACAAATGGTAACAAGAATTTCATTGTAATTGATGGCAGCATGGCAGAGCTTATTCGGCCTAGCCTTTATGGAGCTTACCAACACATCGAGCTAATTTCTCCACCTGCCCCAAAGGCAAAAATTCAAACTTTTGATGTTGTTGGGCCTGTCTGCGAGTCTGCAGACTTTTTAGGAAAGGATAGGGAACTACCAACTCCAGAAATGTGGGCAGGAATGGTGGTCCATGACGCGGGAGCTTACTGTATGAGTATGGCATCAACTTACAATTTAAGAATGAGGCCAGCAGAATACTGGATTCAAGATGATGGATCAGTTCATTAGATAAGACATGCTGAAATATTTGAAGATCATCTCCGTTACTTCAAAGGGCTATGA___CTAAAGGCTGCTGGTAATGATCCTATATCTTTGTTTGAGAGAGATGTTCAATATGGATGGACGGTACCTCTCGTTAAGATCAAATTCAAATTTTGTCTTACTGTTTTAACACGTATGAAGATCGAGCTTCTTAATGCACGAGAGTGAACCTGACTATCAGTTGCATGCTTACAAAAGGTGCAGTCGGTAGAGGGCATGGAAATACATT

Fln Alignment:

Contig4145___PVSKLSENGSILSNPFKGPAKSFRSSESLVTSRVSIPQRRGEVIRKFSVQCRQGVSSRTFQHCFSKNRDGFMYCEGVRLQDVIDTMERRPFYLYSKPQITRNYEAYENALQGLDSIIGYAVKANNNLKILQHLRSLGSGAVLVSGNELRVALNAGFDPSRCIFNGNGKLLDDLVLAAKEGVLVNIDSEFDLENIVEAARIAKKKVQVLLRINPDVDPEVHPYVATGNKNSKFGIRNEKLQWFLDTVKAHPNELNLVGAHCHLGSTITKVNIFKDAAVLMIQYIDQIRAQGFEIKYLNIGGGLGIDYYHKGEVLPTPKDLINSVRELVLSGNLTLIVEPGRSLVANSGVLVSRVVGVKTNGNKNFIVIDGSMAELIRPSLYGAYQHIELISPPAPKAKIQTFDVVGPVCESADFLGKDRELPTPEMWAGMVVHDAGAYCMSMASTYNLRMRPAEYWIQDDGSVH*IRHAEIFEDHLRYFKGL
C0PQH1_________________PVSKLSEN-AILSNPFKAPAKSLRSSESFVASRVSIPRRTGEVIRQFSVQCRQGVSSRTFQHCFRKNRDGFMYCEGVRLQDVIDTMERRPFYLYSKPQITRNYEAYENALKGLDSIIGYAVKANNNLKILEHLRSLGSGAVLVSGNELRLALNAGFDPSRCIFNGNGKLLDDLVLAANEGVLVNIDSEFDLENIVEAAKIAKKKVQVLLRINPDVDPEVHPYVATGNKNSKFGIRNEKLQWFLDTVKAHPNELNLVGAHCHLGSTITKVNIFKDAAVLMIQYIDQIRAQGFEIKYLNIGGGLGIDYHHKGEVLPTPMDLINSVRKLVISGNLTLIVEPGRSLVANSGVLVSRVVGVKTNGNKNFIVMDGSMAELIRPSLYGAYQHIELISPPAPKAKIQTFDVVGPVCESADFLGKDRELPTPAMWAGMVVHDAGAYCMSMASTYNLRMRPAEYWIQDDGSVKKIRHAETIEDHLRYFEGL

SNPs (tot: 15)

Position	A %	C %	G %	T %	Probability
1587	16		83		0.994512
1588	83	16			0.994512
1590			83	16	0.994512
1591			83	16	0.994512
1614	80		20		0.995493
1669	20		80		0.995493
1670		20		80	0.995493
1671	20		80		0.995493
1672			80	20	0.995493
1673		60		40	1.0
1685		33		66	0.997452
1697	66		33		0.997452
1734		66	33		0.997452
1736			33	66	0.997452
1737		33		66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain