SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene4099

Length: 1443 nt

UniGene Fasta

Ace file of the UniGene biog3_v1.0_unigene4099

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene1328	16/16

Source	Descriptions	Term	Type	Identity
AutoFact	dynamin-related protein 1E [Arabidopsis thaliana] sp\|Q9FNX5.1\|DRP1E_ARATH RecName: Full=Dynamin-related protein 1E; AltName: Full=Dynamin-like protein 4; AltName: Full=Dynamin-like protein DLP2; AltName: Full=Dynamin-like protein E gb\|AAL16262.1\|AF428332_	-	-	76%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	94%
Blast2go	dynamin-related protein 1e-like isoform 1	-	-	92%

Source	GOs	Term	Type	Identity
Blast2go	GTP catabolic process	GO:0006184	Biological Process	92%
Blast2go	GTP binding	GO:0005525	Molecular Function	92%
Blast2go	GTPase activity	GO:0003924	Molecular Function	92%

Source	InterPros	Term	Type	Identity
Sma3	Dynamin central domain	IPR000375	-	-
Sma3	Dynamin, GTPase domain	IPR001401	-	-
Sma3	Dynamin, GTPase region, conserved site	IPR019762	-	-
Sma3	Dynamin GTPase effector	IPR003130	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LS11

Fln msg: your sequence is shorter than subject: 475 - 615

Fln protein: GIVTRRPLVLQLHKTDDGPEYGEFLHLPNKRFTDFARVRHEIQEETDRVTGRSKMISPVPIHLSIYSPNVVNLTLVDLPGLTKVAVEGQPESIVGDIENMVRSYVDKPNCLILAISPANQDIATSDAIKLSREVDPTGDRTFGVLTKLDLMDKGTNAVDVLEGRSYRLQHPWVGVVNRSQADINKSVDMIAARRKEREYFQTSPDYGHLSSRMGSEYLAKLLSKQLENAIKARIPSILSLITKTIDELESEMNHLGRPIAVDAGAQLYTILELCRAFDRIFKGPAEASVDAVHFILKELVRKSLNETQELKRFPTLQSEVAAAANEALERFREDGRKTATRLVEMESSYLTVEFFRKLPQEVEKGGNPQASAIDRYTEAHLRRIGSNVSAYVGMVCETLKNSIPKAVVYCQVREAKNSLLNHFYTQVGRKEGKQLAALLDEDPALMERREGCAKRLELYKAARDEIDAVSWARS*

Protein Length: 476

Fln nts: AGGTATTGTGACGAGGCGCCCCTTGGTGCTACAGCTTCACAAAACAGACGACGGCCCAGAATATGGGGAATTCTTACATCTTCCCAATAAGCGATTCACGGATTTTGCTAGAGTGCGTCATGAGATTCAAGAAGAAACAGACAGAGTAACAGGGCGCTCCAAAATGATTTCTCCCGTACCAATTCATCTTAGCATATATTCTCCTAATGTTGTAAATTTAACACTCGTTGATCTGCCTGGTTTGACAAAGGTTGCCGTAGAGGGACAGCCAGAAAGTATTGTTGGTGATATTGAAAATATGGTTCGCAGCTATGTTGATAAGCCCAATTGTCTTATATTGGCAATTTCTCCTGCAAACCAAGATATTGCAACATCTGATGCTATTAAACTTTCCCGAGAAGTTGATCCTACAGGTGATAGGACATTTGGAGTGTTGACAAAGCTTGATCTCATGGACAAGGGAACAAATGCTGTAGATGTTCTTGAGGGGCGATCATATCGTTTACAACATCCATGGGTTGGAGTTGTCAATCGTTCACAAGCCGATATTAACAAGAGTGTGGACATGATTGCTGCCCGGAGAAAGGAACGTGAATATTTTCAAACTAGTCCTGATTATGGACACTTGTCAAGTCGAATGGGTTCAGAATATTTAGCTAAGCTACTTTCTAAGCAACTGGAGAATGCCATTAAGGCACGCATACCAAGTATTCTGTCTTTGATAACCAAAACTATAGATGAACTTGAATCAGAGATGAATCATCTTGGCAGACCTATTGCTGTTGATGCAGGGGCACAATTGTATACAATTTTAGAGCTTTGTCGTGCTTTTGATCGTATTTTCAAAGGCCCTGCTGAAGCATCCGTTGATGCGGTACACTTTATCTTGAAGGAACTTGTTCGTAAATCTTTAAATGAAACTCAGGAGTTGAAGCGCTTCCCTACCCTTCAATCCGAAGTAGCTGCTGCTGCAAACGAAGCTTTAGAGAGGTTCCGTGAGGATGGCCGCAAAACTGCAACAAGATTAGTGGAAATGGAGTCTAGCTATTTGACAGTTGAGTTTTTCCGTAAGCTTCCTCAAGAAGTGGAGAAAGGTGGAAATCCTCAAGCATCTGCCATTGATCGTTATACAGAGGCTCATCTCAGAAGAATAGGTTCCAATGTTTCTGCTTACGTGGGCATGGTGTGTGAGACATTAAAAAATTCTATTCCTAAAGCTGTGGTATATTGTCAAGTTCGTGAGGCCAAGAACTCTTTGCTCAACCACTTCTATACTCAAGTGGGCAGGAAGGAAGGTAAGCAGCTTGCAGCTTTGTTAGATGAAGATCCAGCCTTGATGGAACGTAGGGAAGGATGTGCTAAAAGGCTTGAGCTGTATAAAGCTGCACGGGATGAAATAGATGCTGTGTCTTGGGCAAGATCATAA___TGTAACTATCAGACATT

Fln Alignment:

Contig4099___GIVTRRPLVLQLHKTDDG-PEYGEFLHLPNKRFTDFARVRHEIQEETDRVTGRSKMISPVPIHLSIYSPNVVNLTLVDLPGLTKVAVEGQPESIVGDIENMVRSYVDKPNCLILAISPANQDIATSDAIKLSREVDPTGDRTFGVLTKLDLMDKGTNAVDVLEGRSYRLQHPWVGVVNRSQADINKSVDMIAARRKEREYFQTSPDYGHLSSRMGSEYLAKLLSKQLENAIKARIPSILSLITKTIDELESEMNHLGRPIAVDAGAQLYTILELCRAFDRIFK
B8LS11_________________GIVTRRPLVLQLHKTDDGSPDYAEFLHLPNKRFTDFARVRNEIQEETDRVTGRSKMISPVPIHLSIYSSNVVNLTLVDLPGLTKVAVEGQPESIVGDIENMVRSYVDKPNCLILAISPANQDIATSDAIKLAREVDPSGDRTFGVLTKLDLMDKGTNAIDVLDGRAYRLQHPWVGVANRSQADINKSVDMIAARRKEREYFATSPDYGHLSSRMGSEYLAKLLSKQLESAIKSRIPSILSLINKTIDELESEMNHLGRPIAVDAGAQLYTILELCRAFDRIFK

SNPs (tot: 25)

Position	A %	C %	G %	T %	Probability
228	25		75		0.996473
229	25			75	0.996473
267	16	83			0.994512
269			83	16	0.994512
270		83	16		0.994512
271		83		16	0.994512
383	14			85	0.993533
490	25		75		0.996473
491	25		75		0.996473
492			75	25	0.996473
494		75		25	0.996473
498	20	80			0.995493
501	80		20		0.995493
552	16			83	0.994512
555	83		16		0.994512
556		83		16	0.994512
570	16			83	0.994512
571		16	83		0.994512
580	20	80			0.995493
581	20	80			0.995493
582			80	20	0.995493
584	80			20	0.995493
745	83	16			0.994512
746	16	83			0.994512
837		33	66		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain