SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene4094

Length: 540 nt

UniGene Fasta

>biog3_v1.0_unigene4094
CTTGTTCAGAAGTGTCCTATGAAAGTCTTTGACATTGAAGACCTTGGCGGAGGGAAAAAGAAGGCAAAGGTTGTTCGTCCAAGAGAGTGTACATTATGTCGTGAATGTATTCGTGGGGATGGGTGGGATAAGCGAGTACAATTACGTCGTGTGAAGGAGCACTTCATATTTACCATTGAGTCAACAGGGGCATTGCCACCTGAGGTGCTTTTTACTGAAGCTGTGAAGATTCTCGAAGAGAAATGTGAACGGATATTGGCTGAACTCTCATGAACTGAAAATATGTGCTAGCATATTCATTAATTCAACCTCATCTTTGTGCTTGTAGATCAGCAAAAGCAATTTTGATTGCGGAGTAATAGGTGTGCTTGTAACAGAGAGCTCTGATTACATAATATGTAATAGGTGATCTTTGATTTTTCAGTCATTCATTGTTGAATAGGTTTGAGAGCCTTCTTTCCTCTATATTTTAATATTAGTTCTTGTCATAGAAAATTTCATGTTCTTCATGGCGAGTTTGAGTGATTAACTGAACACATT

Ace file of the UniGene biog3_v1.0_unigene4094

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene27853	3/3

Source	Descriptions	Term	Type	Identity
AutoFact	RNA polymerase I subunit 43 [Arabidopsis thaliana] gb\|AAK62414.1\|AF386969_1 RNA polymerase subunit (isoform B) [Arabidopsis thaliana] gb\|AAB00529.1\| RNA polymerase subunit [Arabidopsis thaliana] gb\|AAB71974.1\| RNA polymerase subunit (isoform B) [Arabidops	-	-	65%
FL-Next	tr=DNA-directed RNA polymerase I/III subunits, putative; Ricinus communis (Castor bean).	-	-	78%
Blast2go	rna polymerase subunit	-	-	77%

Source	GOs	Term	Type	e value	Identity
Blast2go	nucleolus	GO:0005730	Cellular Component	0.0	77%

Source	InterPros	Term	Type	Identity
Sma3	DNA-directed RNA polymerase, 30-40kDa subunit, conserved site	IPR001514	-	-
Sma3	DNA-directed RNA polymerase, dimerisation	IPR011261	-	-
Sma3	DNA-directed RNA polymerase, insert domain	IPR011262	-	-
Sma3	DNA-directed RNA polymerase, RpoA/D/Rpb3-type	IPR011263	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: tr_plants

Fln subject: B9S9W7

Fln msg: your sequence is shorter than subject: 91 - 374

Fln protein: LVQKCPMKVFDIEDLGGGKKKAKVVRPRECTLCRECIRGDGWDKRVQLRRVKEHFIFTIESTGALPPEVLFTEAVKILEEKCERILAELS*

Protein Length: 92

Fln nts: CTTGTTCAGAAGTGTCCTATGAAAGTCTTTGACATTGAAGACCTTGGCGGAGGGAAAAAGAAGGCAAAGGTTGTTCGTCCAAGAGAGTGTACATTATGTCGTGAATGTATTCGTGGGGATGGGTGGGATAAGCGAGTACAATTACGTCGTGTGAAGGAGCACTTCATATTTACCATTGAGTCAACAGGGGCATTGCCACCTGAGGTGCTTTTTACTGAAGCTGTGAAGATTCTCGAAGAGAAATGTGAACGGATATTGGCTGAACTCTCATGA___ACTGAAAATATGTGCTAGCATATTCATTAATTCAACCTCATCTTTGTGCTTGTAGATCAGCAAAAGCAATTTTGATTGCGGAGTAATAGGTGTGCTTGTAACAGAGAGCTCTGATTACATAATATGTAATAGGTGATCTTTGATTTTTCAGTCATTCATTGTTGAATAGGTTTGAGAGCCTTCTTTCCTCTATATTTTAATATTAGTTCTTGTCATAGAAAATTTCATGTTCTTCATGGCGAGTTTGAGTGATTAACTGAACACATT

Fln Alignment:

Contig4094___LVQKCPMKVFDIEDLGGGKKKAKVVRPRECTLCRECIRGDGWDKRVQLRRVKEHFIFTIESTGALPPEVLFTEAVKILEEKCERILAELS
B9S9W7_________________LTKKCPVNVFDIEDIGNGKKRATVARPRACTLCRECIRGGEWDKRVSLRRVKDHFIFTIESTGALPPEVLFTEAVKVLEDKCERVITELS

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
147	25		75		0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain