SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene4084

Length: 744 nt

UniGene Fasta

Ace file of the UniGene biog3_v1.0_unigene4084

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene8711	7/7

Source	Descriptions	Term	Type	Identity
AutoFact	rhamnosyl transferase [Nierembergia sp. NB17]	-	-	34%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	65%
Blast2go	protein	-	-	59%

Source	ECs	Term	Type	e value	Identity
Blast2go	Transferases, Glycosyltransferases, Hexosyltransferases.	EC:2.4.1.-	-	0.0	59%

Source	KEGGs	Term	Identity
Blast2go	Fructose and mannose metabolism	00051	59%
Blast2go	N-Glycan biosynthesis	00510	59%
Blast2go	Mucin type O-Glycan biosynthesis	00512	59%
Blast2go	Various types of N-glycan biosynthesis	00513	59%
Blast2go	Other types of O-glycan biosynthesis	00514	59%
Blast2go	Biosynthesis of 12-, 14- and 16-membered macrolides	00522	59%
Blast2go	Glycosaminoglycan biosynthesis - keratan sulfate	00533	59%
Blast2go	Lipopolysaccharide biosynthesis	00540	59%
Blast2go	Peptidoglycan biosynthesis	00550	59%
Blast2go	Glycerolipid metabolism	00561	59%
Blast2go	Glycosylphosphatidylinositol(GPI)-anchor biosynthesis	00563	59%
Blast2go	Sphingolipid metabolism	00600	59%
Blast2go	Glycosphingolipid biosynthesis - lacto and neolacto series	00601	59%
Blast2go	Glycosphingolipid biosynthesis - globo series	00603	59%
Blast2go	Glycosphingolipid biosynthesis - ganglio series	00604	59%
Blast2go	Carotenoid biosynthesis	00906	59%
Blast2go	Zeatin biosynthesis	00908	59%
Blast2go	Flavonoid biosynthesis	00941	59%
Blast2go	Anthocyanin biosynthesis	00942	59%
Blast2go	Flavone and flavonol biosynthesis	00944	59%
Blast2go	Stilbenoid, diarylheptanoid and gingerol biosynthesis	00945	59%
Blast2go	Betalain biosynthesis	00965	59%
Blast2go	Biosynthesis of type II polyketide products	01057	59%
Blast2go	Metabolic pathways	01100	59%
Blast2go	Biosynthesis of secondary metabolites	01110	59%

Source	GOs	Term	Type	e value	Identity
Blast2go	metabolic process	GO:0008152	Biological Process	0.0	59%
Blast2go	transferase activity, transferring hexosyl groups	GO:0016758	Molecular Function	0.0	59%

Source	InterPros	Term	Type	Identity
Sma3	NADH:flavin oxidoreductase/NADH oxidase, N-terminal	IPR001155	-	-
Sma3	UDP-glucuronosyl/UDP-glucosyltransferase	IPR002213	-	-
Sma3	Aldolase-type TIM barrel	IPR013785	-	-

Full-Lengther Next Prediction

SNPs (tot: 8)

Position	A %	C %	G %	T %	Probability
194	25			75	0.996473
195	25			75	0.996473
196		75		25	0.996473
197		75	25		0.996473
394	14		85		0.993533
395	14	85			0.993533
583		33	66		0.997452
586		66		33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain