SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene4062

Length: 517 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene4062
ACTGAATGATGCTACCTCAACGTTGCCTTTGGACTTGGAAACAGATATCAGAACCGGAATTCCAAAATCTTTAAGTAAAAGTGTTAATGACCATTCGCCTTACATTGGCTCACTTGCAGACAGTACACAAGCTGGAGAACTTTTCAGTGGGACTCTTCATGGACGGAAGCCACCTCCTACTGGCACAACTATGGCAGATCAGATGGATCTTCTCATGGAGCAAGTAAGATGCTGGCTGGTGAGGTTGCTTTTAGTACGAGTTCCCTGAAACGTCTTTCTGAGCAAGCGGCAAAGAATCCTGTGGACATTAAAATTCAAGCTCAAATACAAAAAATGGAGGATGAGATTGAAGAGAAAAAACGCCAAATGAGAGTCCTGGAGCGGCGAATTACTGGAACTGGAGAAGCCATTGCAAATAATGCATCCCCAGCAGAAACACAACAGACAATTGCAAAGTTAATGAGCCAGTGCAATGAGAAAGCTTTTGAGCTAGAGATAAAGTCTGCTGACAACCGTA

Ace file of the UniGene biog3_v1.0_unigene4062 (antisense)

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene591	5/5

Source	Descriptions	Term	Type	Identity
AutoFact	putative kinesin [Arabidopsis thaliana]	-	-	67%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	49%
Blast2go	kinesin heavy chain	-	-	77%

Source	GOs	Term	Type	Identity
Blast2go	microtubule-based movement	GO:0007018	Biological Process	77%
Blast2go	ATP binding	GO:0005524	Molecular Function	77%
Blast2go	zinc ion binding	GO:0008270	Molecular Function	77%
Blast2go	microtubule motor activity	GO:0003777	Molecular Function	77%
Blast2go	plastid	GO:0009536	Cellular Component	77%
Blast2go	microtubule	GO:0005874	Cellular Component	77%

Source	InterPros	Term	Type	Identity
Sma3	Kinesin, motor domain	IPR001752	-	-
Sma3	Zinc finger, RING-type	IPR001841	-	-
Sma3	Aminotransferase, class-II, pyridoxal-phosphate binding site	IPR001917	-	-
Sma3	Kinesin-related conserved domain	IPR010544	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: F6I199

Fln msg: Separated hits, possible frame ERROR between 223 and 226, Distance to subject end: 379 aas, your sequence is shorter than subject: 172 - 1101

Fln protein: LNDATSTLPLDLETDIRTGIPKSLSKSVNDHSPYIGSLADSTQAGELFSGTLHGRKPPPTGTTMADQMDLLMExxKMLAGEVAFSTSSLKRLSEQAAKNPVDIKIQAQIQKMEDEIEEKKRQMRVLERRITGTGEAIANNASPAETQQTIAKLMSQCNEKAFELEIKSADNR

Protein Length: 173

Fln nts: ACTGAATGATGCTACCTCAACGTTGCCTTTGGACTTGGAAACAGATATCAGAACCGGAATTCCAAAATCTTTAAGTAAAAGTGTTAATGACCATTCGCCTTACATTGGCTCACTTGCAGACAGTACACAAGCTGGAGAACTTTTCAGTGGGACTCTTCATGGACGGAAGCCACCTCCTACTGGCACAACTATGGCAGATCAGATGGATCTTCTCATGGAGCAxxxTAAGATGCTGGCTGGTGAGGTTGCTTTTAGTACGAGTTCCCTGAAACGTCTTTCTGAGCAAGCGGCAAAGAATCCTGTGGACATTAAAATTCAAGCTCAAATACAAAAAATGGAGGATGAGATTGAAGAGAAAAAACGCCAAATGAGAGTCCTGGAGCGGCGAATTACTGGAACTGGAGAAGCCATTGCAAATAATGCATCCCCAGCAGAAACACAACAGACAATTGCAAAGTTAATGAGCCAGTGCAATGAGAAAGCTTTTGAGCTAGAGATAAAGTCTGCTGACAACCGTA

Fln Alignment:

Contig4062___LPLDLETDIRTGIPKSLSKSVNDHSPYIGSLADSTQAGELFSGTLHGRKPPPTGTTMADQMDLLMEQxKMLAGEVAFSTSSLKRLSEQAAKNPVDIKIQAQIQKMEDEIEEKKRQMRVLERRITGTGEAIANNASPAETQQTIAKLMSQCNEKAFELEIKSADNR
F6I199_________________IPSDLTCDFRHR--RSSSKWNEELSPASSTVTESTQAGELISGSACGSKLPTGGMTMSDQMDLLVEQxKMLAGEIAFSTSTLKRLMEQSVNDPDGSK--TQIQNLEHELQEKKRQMRILEQRMMETGEASFANASMVDMQQTVMKLMTQCSEKGFELEIKTADNR

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
286			75	25	0.996473
287		75		25	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain