SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene4023

Length: 1359 nt

UniGene Fasta

Ace file of the UniGene biog3_v1.0_unigene4023

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene783	34/40
SustainPine v2.0	sp_v2.0_unigene795	3/40
SustainPine v2.0	sp_v2.0_unigene8819	1/40
SustainPine v2.0	sp_v2.0_unigene16735	2/40

Source	Descriptions	Term	Type	Identity
AutoFact	Whole genome shotgun sequence of line PN40024, scaffold_26.assembly12x (Fragment) n=3 Tax=rosids RepID=D7TNE7_VITVI	-	-	73%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	97%
Blast2go	probable receptor-like protein kinase at5g15080-like	-	-	82%

Source	ECs	Term	Type	e value	Identity
Blast2go	Transferases, Transferring phosphorous-containing groups, Protein-tyrosine kinases.	EC:2.7.10.-	-	0.0	82%
Blast2go	Mitogen-activated protein kinase kinase kinase.	EC:2.7.11.25	-	0.0	82%

Source	GOs	Term	Type	Identity
Blast2go	protein phosphorylation	GO:0006468	Biological Process	82%
Blast2go	protein tyrosine kinase activity	GO:0004713	Molecular Function	82%
Blast2go	ATP binding	GO:0005524	Molecular Function	82%
Blast2go	MAP kinase kinase kinase activity	GO:0004709	Molecular Function	82%

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LRT7

Fln msg: Overlapping hits, possible frame ERROR between 911 and 907, your sequence is shorter than subject: 435 - 484

Fln protein: CKVDNSISSPAIHSAETKSPNDSGKEPPAAQTVSSTSTSNTGSNPSTPKVGDDLKVASQLRKFTFNDLKYATRNFRPESLLGEGGFGCVFKGWIEENGTAPVKPGTGLTVAVKTLNHDGLQGHKEWLAEVNFLGDLIHPNLVKLIGYCIEDDQRLLVYEFMPRGSLENHLFRKGSLPLPWSIRMKIALGAAKGLAYLHGGAERPVIYRDFKTSNILLDSEYNAKLSDFGLAKDGPEGDKTHVSTRVMGTYGYAAPEYVMTGHLTSRSDVYSFGVVLLEMLTGRRSMDKNRPSGEHNLVEWAxxxYLGEKRRLYRLIDPRLEGNFSIKGAQKAAQLACHCLSRDPKARPLMSEVVEALRPLLNLKDMASSSFHYQALQAERSSRQQQLVNGNGQLKNGAYLNGQLSSKNGRPRVLANISHASPYRQSPRQNGKVS*

Protein Length: 436

Fln nts: AATGTAAAGTAGATAACTCCATAAGCAGCCCTGCTATCCATTCTGCTGAAACTAAATCTCCAAATGATAGTGGCAAAGAGCCGCCTGCTGCTCAGACAGTGTCTTCCACAAGTACTAGTAATACAGGAAGCAATCCATCCACTCCCAAAGTAGGAGATGATTTGAAAGTTGCATCCCAGTTGCGCAAATTCACTTTTAATGATTTGAAGTATGCAACCAGAAACTTCAGGCCAGAAAGTCTTCTTGGTGAAGGTGGCTTTGGTTGTGTTTTCAAAGGTTGGATAGAAGAGAATGGCACTGCTCCTGTCAAGCCTGGTACTGGTCTCACTGTAGCTGTAAAAACACTCAACCATGATGGGCTGCAAGGTCACAAGGAATGGCTGGCAGAAGTCAATTTTCTTGGGGACCTTATCCATCCTAATCTGGTTAAACTTATTGGGTATTGCATAGAAGATGATCAGAGGCTACTTGTGTATGAGTTTATGCCTCGAGGTAGCCTGGAGAATCATCTCTTCAGAAAAGGGTCCCTGCCCCTGCCATGGTCTATCAGGATGAAAATTGCATTGGGTGCAGCCAAAGGCCTGGCATATCTCCATGGAGGAGCTGAAAGACCTGTGATTTATCGGGATTTTAAGACGTCCAACATCCTGTTGGATTCGGAATACAATGCCAAACTTTCTGACTTTGGTCTAGCAAAAGATGGACCTGAAGGAGACAAAACTCATGTTTCTACTCGAGTCATGGGAACTTATGGCTATGCAGCTCCTGAGTATGTAATGACTGGACATTTGACATCGAGGAGTGATGTCTATAGCTTTGGTGTTGTTCTACTTGAAATGTTAACTGGTCGAAGATCCATGGACAAAAACAGGCCTAGTGGGGAGCACAATCTGGTGGAGTGGGCAxxxxxxxxxTACCTTGGTGAGAAAAGAAGGTTATATCGTCTTATAGACCCCCGTTTGGAGGGTAACTTTTCCATTAAAGGAGCACAAAAGGCTGCCCAGTTGGCTTGCCATTGCCTCAGTCGAGATCCAAAAGCTAGGCCTTTAATGAGTGAGGTTGTTGAGGCACTCAGACCTTTGTTGAATTTGAAAGACATGGCAAGCTCATCCTTTCACTATCAAGCATTGCAAGCAGAACGTTCAAGTCGTCAACAGCAATTGGTAAACGGAAATGGACAGTTGAAGAATGGTGCATATCTAAATGGGCAATTATCTTCAAAGAATGGACGCCCACGAGTTCTCGCTAATATTTCTCACGCTTCACCATATCGTCAATCTCCAAGGCAAAATGGTAAAGTATCATAGGTGATTGGACCTCTTTTCCATCATTTCTTTCTTGAATTTGTACACTTGTACATT

Fln Alignment:

Contig4023___KVDNSISSPAIHSAETKSPNDSGKEPPAAQTVXXXXXXXXXXXXXXXKVGDDLKVASQLRKFTFNDLKYATRNFRPESLLGEGGFGCVFKGWIEENGTAPVKPGTGLTVAVKTLNHDGLQGHKEWLAEVNFLGDLIHPNLVKLIGYCIEDDQRLLVYEFMPRGSLENHLFRKGSLPLPWSIRMKIALGAAKGLAYLHGGAERPVIYRDFKTSNILLDSEYNAKLSDFGLAKDGPEGDKTHVSTRVMGTYGYAAPEYVMTGHLTSRSDVYSFGVVLLEMLTGRRSMDKNRPSGEHNLVEWAxxYLGEKRRLYRLIDPRLEGNFSIKGAQKAAQLACHCLSRDPKARPLMSEVVEALRPLLNLKDMASSSFHYQALQAERSSRQQQLVNGNGQLKNGAYLNGQLSSKNGRPRVLANISHASPYRQSPRQNGKVS
B8LRT7_________________KVDNSISSTAIHSAETKSPNDSSKEPPAAQTVSSTSTSNTGSNPSTPKVGDELKVASQLRKFTFNDLKYATRNFRPESLLGEGGFGCVFKGWIEENGTAPVKPGTGLTVAVKTLNHDGLQGHKEWLAEVNFLGDLIHPNLVKLIGYCIEDDQRLLVYEFMPRGSLENHLFRR-SLPLPWSIRMKIALGAAKGLAFLHGGAERPVIYRDFKTSNILLDSEYNAKLSDFGLAKDGPEGDKTHVSTRVMGTYGYAAPEYVMTGHLTSRSDVYSFGVVLLEMLTGRRSMDKSRPSGEHNLVEWAxxYLGEKRRLYRLIDPRLDGNFSIKGAQKAAQLACHCLSRDPKARPLMSEVVEALRPLLNLKDMASSSFHYQALQAERSSRQQQLANGNGQLKNVAYLNGQLSSKNGRPRVITNISHASPYRQSPRQNGKGS

SNPs (tot: 39)

Position	A %	C %	G %	T %	Probability
203	14			85	0.993533
204	14			85	0.993533
208	85			14	0.993533
345	20	80			0.995493
347		80		20	0.995493
430	80	20			0.995493
562		80		20	0.995493
670	12	87			0.992554
673	87			12	0.992554
674	87			12	0.992554
742	12			87	0.992554
744			87	12	0.992554
768		14	85		0.993533
770			85	14	0.993533
806		16		83	0.994512
807	16		83		0.994512
826	20			80	0.995493
827		20		80	0.995493
828	20	80			0.995493
830	20			20	0.99255
864	20	80			0.995493
865	80	20			0.995493
904	40		60		1.0
908		60		40	1.0
933			75	25	0.996473
950		25	75		0.996473
952		75		25	0.996473
953		75		25	0.996473
976	25	75			0.996473
996	20		80		0.995493
997	20	80			0.995493
1000		80		20	0.995493
1065	18		81		0.999994
1067			72	18	0.999994
1069		81		18	0.999994
1208	11		88		0.923564
1283	25	75			0.996473
1286	75			25	0.996473
1287			75	25	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain