SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene4022

Length: 1261 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog3_v1.0_unigene4022 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene3065	23/23

Source	Descriptions	Term	Type	Identity
AutoFact	Monocopper oxidase-like protein SKU5 [Arabidopsis thaliana] ref\|NP_001190704.1\| Monocopper oxidase-like protein SKU5 [Arabidopsis thaliana] sp\|Q9SU40.1\|SKU5_ARATH RecName: Full=Monocopper oxidase-like protein SKU5; AltName: Full=Skewed roots; Flags: Precu	-	-	67%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	100%
Blast2go	monocopper oxidase-like protein sku5	-	-	84%

Source	ECs	Term	Type	e value	Identity
Blast2go	L-ascorbate oxidase.	EC:1.10.3.3	-	0.0	84%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Ascorbate and aldarate metabolism	00053		0.0	84%
Blast2go	Metabolic pathways	01100		0.0	84%

Source	GOs	Term	Type	Identity
Blast2go	cell tip growth	GO:0009932	Biological Process	84%
Blast2go	oxidation-reduction process	GO:0055114	Biological Process	84%
Blast2go	copper ion binding	GO:0005507	Molecular Function	84%
Blast2go	L-ascorbate oxidase activity	GO:0008447	Molecular Function	84%
Blast2go	plant-type cell wall	GO:0009505	Cellular Component	84%
Blast2go	anchored to plasma membrane	GO:0046658	Cellular Component	84%
Blast2go	cytoplasmic membrane-bounded vesicle	GO:0016023	Cellular Component	84%
Blast2go	vacuolar membrane	GO:0005774	Cellular Component	84%
Blast2go	apoplast	GO:0048046	Cellular Component	84%

Full-Lengther Next Prediction

SNPs (tot: 22)

Position	A %	C %	G %	T %	Probability
424	16			83	0.994512
425		16		83	0.994512
427		83		16	0.994512
446			80	20	0.995493
520	33	66			0.997452
578	75	25			0.996473
580		75		25	0.996473
581			75	25	0.996473
599	33		66		0.997452
618		33		66	0.997452
622	66			33	0.997452
626			75	25	0.996473
642	25		75		0.996473
646			75	25	0.996473
822	14		85		0.993533
823	85	14			0.993533
1164		20	80		0.995493
1166			80	20	0.995493
1167		80		20	0.995493
1204		75	25		0.996473
1206	25			75	0.996473
1207	25			75	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain