SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene4012

Length: 627 nt

UniGene Fasta

Ace file of the UniGene biog3_v1.0_unigene4012

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene2474	7/7

Source	Descriptions	Term	Type	Identity
AutoFact	Glucosyltransferase, putative n=1 Tax=Ricinus communis RepID=B9SSF3_RICCO	-	-	64%
FL-Next	tr=Predicted protein; subsp. trichocarpa).	-	-	64%
Blast2go	nucleotide-diphospho-sugar transferase domain-containing protein	-	-	77%

Source	ECs	Term	Type	e value	Identity
Blast2go	Transferases, Glycosyltransferases, Hexosyltransferases.	EC:2.4.1.-	-	0.0	77%

Source	KEGGs	Term	Identity
Blast2go	Fructose and mannose metabolism	00051	77%
Blast2go	N-Glycan biosynthesis	00510	77%
Blast2go	Mucin type O-Glycan biosynthesis	00512	77%
Blast2go	Various types of N-glycan biosynthesis	00513	77%
Blast2go	Other types of O-glycan biosynthesis	00514	77%
Blast2go	Biosynthesis of 12-, 14- and 16-membered macrolides	00522	77%
Blast2go	Glycosaminoglycan biosynthesis - keratan sulfate	00533	77%
Blast2go	Lipopolysaccharide biosynthesis	00540	77%
Blast2go	Peptidoglycan biosynthesis	00550	77%
Blast2go	Glycerolipid metabolism	00561	77%
Blast2go	Glycosylphosphatidylinositol(GPI)-anchor biosynthesis	00563	77%
Blast2go	Sphingolipid metabolism	00600	77%
Blast2go	Glycosphingolipid biosynthesis - lacto and neolacto series	00601	77%
Blast2go	Glycosphingolipid biosynthesis - globo series	00603	77%
Blast2go	Glycosphingolipid biosynthesis - ganglio series	00604	77%
Blast2go	Carotenoid biosynthesis	00906	77%
Blast2go	Zeatin biosynthesis	00908	77%
Blast2go	Flavonoid biosynthesis	00941	77%
Blast2go	Anthocyanin biosynthesis	00942	77%
Blast2go	Flavone and flavonol biosynthesis	00944	77%
Blast2go	Stilbenoid, diarylheptanoid and gingerol biosynthesis	00945	77%
Blast2go	Betalain biosynthesis	00965	77%
Blast2go	Biosynthesis of type II polyketide products	01057	77%
Blast2go	Metabolic pathways	01100	77%
Blast2go	Biosynthesis of secondary metabolites	01110	77%

Source	GOs	Term	Type	Identity
Blast2go	carbohydrate biosynthetic process	GO:0016051	Biological Process	77%
Blast2go	transferase activity, transferring hexosyl groups	GO:0016758	Molecular Function	77%
Blast2go	membrane	GO:0016020	Cellular Component	77%
Blast2go	cytoplasmic membrane-bounded vesicle	GO:0016023	Cellular Component	77%

Source	InterPros	Term	Type	e value	Identity
Sma3	Glycosyl transferase, family 8	IPR002495	-	0.0	-

Full-Lengther Next Prediction

SNPs (tot: 12)

Position	A %	C %	G %	T %	Probability
149	20	80			0.995493
150	20			80	0.995493
196		20		80	0.995493
281			80	20	0.995493
288	25	75			0.996473
289		25		75	0.996473
290	25		75		0.996473
291		75		25	0.996473
313	25		75		0.996473
314	25			75	0.996473
315			75	25	0.996473
317			75	25	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain