SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene4003

Length: 279 nt

UniGene Fasta

>biog3_v1.0_unigene4003
AATGTTTCACATCTTTACCAGGTAAAAGCTGTGGCAGAGGAAATGGGTCTGGGGTTCCTAGGGATTGGGTTCCAACCAAAATGGGCTGTGAAGGATATACCAATAATGCCAAAGGGAAGATATGACATAATGCGTAACTACATGCCTAAAGTAGGGTCTCTAGGACTTGACATGATGTTTCGAACATGCACTGTACAGGTTAATCTTGACTTCAGTTCAGAAGTAGATATGGTGCGTAAGTTTCGTCTTGGACTTGCCTTGCAGCCTATTGCACAGCAC

Ace file of the UniGene biog3_v1.0_unigene4003

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene187	3/3

Source	Descriptions	Term	Type	Identity
AutoFact	RecName: Full=Glutamate--cysteine ligase, chloroplastic; AltName: Full=Gamma-ECS; Short=GCS; AltName: Full=Gamma-glutamylcysteine synthetase; Flags: Precursor gb\|AAB71230.1\| gamma-glutamylcysteine synthetase [Solanum lycopersicum]	-	-	81%
FL-Next	sp=Glutamate--cysteine ligase A, chloroplastic; Oryza sativa subsp. japonica (Rice).	-	-	91%
Blast2go	gamma-glutamylcysteine synthetase	-	-	89%

Source	ECs	Term	Type	e value	Identity
Blast2go	Glutamate--cysteine ligase.	EC:6.3.2.2	-	0.0	89%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Glutathione metabolism	00480		0.0	89%
Blast2go	Metabolic pathways	01100		0.0	89%

Source	GOs	Term	Type	Identity
Blast2go	glutathione biosynthetic process	GO:0006750	Biological Process	89%
Blast2go	glutamate-cysteine ligase activity	GO:0004357	Molecular Function	89%
Blast2go	ATP binding	GO:0005524	Molecular Function	89%
Blast2go	chloroplast	GO:0009507	Cellular Component	89%

Source	InterPros	Term	Type	e value	Identity
Sma3	Glutamate--cysteine ligase, GCS2	IPR006336	-	0.0	-
Sma3	Glutamate--cysteine ligase, plant	IPR011556	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q688Q9

Fln msg: Distance to subject end: 241 aas, your sequence is shorter than subject: 93 - 492

Fln protein: NVSHLYQVKAVAEEMGLGFLGIGFQPKWAVKDIPIMPKGRYDIMRNYMPKVGSLGLDMMFRTCTVQVNLDFSSEVDMVRKFRLGLALQPIAQH

Protein Length: 94

Fln nts: AATGTTTCACATCTTTACCAGGTAAAAGCTGTGGCAGAGGAAATGGGTCTGGGGTTCCTAGGGATTGGGTTCCAACCAAAATGGGCTGTGAAGGATATACCAATAATGCCAAAGGGAAGATATGACATAATGCGTAACTACATGCCTAAAGTAGGGTCTCTAGGACTTGACATGATGTTTCGAACATGCACTGTACAGGTTAATCTTGACTTCAGTTCAGAAGTAGATATGGTGCGTAAGTTTCGTCTTGGACTTGCCTTGCAGCCTATTGCACAGCAC

Fln Alignment:

Contig4003___SHLYQVKAVAEEMGLGFLGIGFQPKWAVKDIPIMPKGRYDIMRNYMPKVGSLGLDMMFRTCTVQVNLDFSSEVDMVRKFRLGLALQPIA
Q688Q9_________________SHLYQVKAVGEEMGIGFLGIGFQPKWALSDIPIMPKGRYEIMRNYMPKVGSLGLDMMFRTCTVQVNLDFSSEQDMIRKFRTGLALQPIA

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain