SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene3959

Length: 291 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene3959
CAAAGTGTACGACCTCCAGGAGACTTGGCTCTACTGCTCCACCCCCTGCCTCATACACAGCCGCACTTTTTCCGACTGTCTTCTGCCATCCGATCGCAACGCTGACGCTGCTCTCGAATCGAATTCAGACAGAATTCTCCACATTCTCGAAGCGGTCGGTTCTCTCTCCCTCGACGAGGCTCAAACTGAGAATGTTCCAGAAACCCCAAAGATTGTGCCAGAACGCCCCCAAGAAAATAACGTTCTTGAAGAATTTAAAGAGGGCAAGAAGAATGAGAACAATAACACATT

Ace file of the UniGene biog3_v1.0_unigene3959 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene339	3/3

Source	Descriptions	Term	Type	e value	Identity
AutoFact	RPAP2_Rtr1 domain containing protein	-	-	3.0e-19	48%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	85%
Blast2go	uncharacterized protein	-	-	0.0	55%

Source	InterPros	Term	Type	e value	Identity
Sma3	Carbamoyl-phosphate synthetase, large subunit, ATP-binding	IPR005479	-	0.0	-
Sma3	Protein of unknown function DUF408	IPR007308	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LQ23

Fln msg: Distance to subject end: 488 aas, your sequence is shorter than subject: 96 - 668

Fln protein: KVYDLQETWLYCSTPCLIHSRTFSDCLLPSDRNADAALESNSDRILHILEAVGSLSLDEAQTENVPETPKIVPERPQENNVLEEFKEGKKNENNNT

Protein Length: 97

Fln nts: CAAAGTGTACGACCTCCAGGAGACTTGGCTCTACTGCTCCACCCCCTGCCTCATACACAGCCGCACTTTTTCCGACTGTCTTCTGCCATCCGATCGCAACGCTGACGCTGCTCTCGAATCGAATTCAGACAGAATTCTCCACATTCTCGAAGCGGTCGGTTCTCTCTCCCTCGACGAGGCTCAAACTGAGAATGTTCCAGAAACCCCAAAGATTGTGCCAGAACGCCCCCAAGAAAATAACGTTCTTGAAGAATTTAAAGAGGGCAAGAAGAATGAGAACAATAACACATT

Fln Alignment:

Contig3959___KVYDLQETWLYCSTPCLIHSRTFSDCLLPSDRNADAALESNSDRILHILEAVGSLSLDEAQTENVPETPKIVPERPQENNVL
B8LQ23_________________KVYDLQETWLYCSTPCLINSRTFSDCLLPPDRNADAALEWNSDRILHILEAVGSLSLDDAETENVSETPKNVPEPAPKKNVL

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain