SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene3951

Length: 1994 nt

UniGene Fasta

>biog3_v1.0_unigene3951
AATGTATCACCACTGGATCTCTGCTCTACCGCGTCAACACCGCCCCTTATCCTGTTCAAATCTCCAGCACAAACACTCCCTACAATAATCACCTCCTACACGCCTACGTGGCCCGGACCTTCCTTGCCCTCAAGTCAGATCCGCTGAAAACCCGGTTGGATCTGCTGTTCAAGCAAGCGTATGACCACCTCAGCCTGATCAATGCATATGCTGCGTATGCCCGCAGACTCAAGCTTGAGAACATGAAGCAGGTTCGAATCTTCACAGATCAGGCCAGAAACTACACGGAACTAATGAATAAACCCGAGTATCGGGCTCTAATGGATACTAATGATATGATCGATGAAGAAACCCTTAGGCAATTTGAGAAGGAGGTGAAAGAAAGGATCAAGGTCACACGGCAATTGATTGCTGACGCTAAAGAGTCGTTTGATAACCAGTTGAAGATCCAAAAGCTCAAGGACACAATATTTGCTGTGAACGACCAGTTAACCCGGGCTAAGAAGCAGGGGGCTTTTGCTAGCTTAATTGCAGCTAAGTCCATCCCTAAGAGCATCCATTGCCTGTCTATGAGGTTAATGGAGGAACGGATCTCACAGCCAGAAAAGTATATTGATAAAGGCGACCCTCCGCCACAGTGGGAGGACCCTAACCTCTACCATTATGCCATATTTTCCGACAATGTCATTGCTGCTTCGGTTGTCGTCAATTCTGCAGTTAAGAATGCCAAAGAACCCTGGAAGCATGTATTTCATGTCGTAACCGACAAGATGAATCTTGCCGCAATGCAGGTCTGGTTCAAGATGCGCTCGCTAAATGGATCACATGTTGAGGTTAAAGCTGTTGAGGATTACAAGTTCTTGAATTCTTCCTATGTTCCGGTTTTGCGACAGCTCGAGTCCGCTAACTTGCAAAGGTTTTACTTCGAGAATAAGTTGGAGAATGCAACAAAGGATGCTCCTAATATGAAGTTTAGGAATCCCAAGTATCTTTCCATGTTGAATCATCTGCGCTTTTATTTGCCTGAGATGTATCCAAAGTTACACCGGATCTTGTTTCTAGATGATGATGTTGTTGTTCAGAAGGACCTGACGGGATTATGGGAGATAGATATGGAAGGAAAGGTTAACGGGGCTGTGGAGACATGCTTTGGTTCATTCCATCGTTATGATAAGTATATGAATTTCTCTCATCCTCTGATCAAGGCAAGATTCAATCCCAAGGCTTGTGGTTGGGCTTATGGAATGAATTTCTTCCACTTGGATGCATGGAGAAGGGAGAAGTGTACTGAAGAATATCACTACTGGCAAAACCTGAATGAGAATCGTACATTGTGGAAGCTGGGGACATTACCACCAGGCCTGATCACTTATTATAAAACAACCAAGCCTTTAGATAAATCTTGGCATGTTCTTGGTCTTGGATATAACCCCAGTATTAGTATGGACGAAATCCGCAATGCAGCCGTTGTTCACTTCAATGGAAATATGAAACCATGGCTTGATATTGGCATGAATCAATATCGAGACACCTGGACCAAGTATGTAGACTATGATATGGAGTTTATACAGATGTGCAACTTCGGTCATTGAAAAAAAATCTCAAGGATTTGGAGTTATTTTATTTAAGCCGGCTAACATGCCTACAATAAGGCATGGTTTTATGTTATGCTTTGTTGCTAATCATATCTCATCAAGTTGCTAAAACATTTTACGGTTTATGTAAGGAGATGTCCGAGAATGTTATAGCTTCCTTTTTAAATTTGTTTAGAGATCTGTTGTGACTTTTGTAATATTTGATTGCGCTGTTGTAAAGTTTCTACTCGTTTAATTGTTATTTGGTTCCTCAATTTATGTTGGTTCATGGGATCATGGACTAAACAGAGAACATATTTCCTTTACTTGGGAATTTATAGAGTACAATAGCAATGCACTCTGGCAGGTAGATTGTGTCATGTCATACCTGGCCAGCTGAGATGTGGCTGAGATGACATT

Ace file of the UniGene biog3_v1.0_unigene3951

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene28164	44/46
SustainPine v2.0	sp_v2.0_unigene70511	2/46

Source	Descriptions	Term	Type	Identity
AutoFact	Glycosyltransferase, CAZy family GT8 n=3 Tax=Malpighiales RepID=B9GQM0_POPTR	-	-	80%
FL-Next	sp=Galacturonosyltransferase 8; Arabidopsis thaliana (Mouse-ear cress).	-	-	83%
Blast2go	quasimodo1-like protein	-	-	88%

Source	GOs	Term	Type	Identity
Blast2go	homogalacturonan biosynthetic process	GO:0010289	Biological Process	88%
Blast2go	transferase activity, transferring glycosyl groups	GO:0016757	Molecular Function	88%
Blast2go	Golgi apparatus	GO:0005794	Cellular Component	88%
Blast2go	mitochondrion	GO:0005739	Cellular Component	88%

Source	InterPros	Term	Type	e value	Identity
Sma3	Glycosyl transferase, family 8	IPR002495	-	0.0	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: sp_plants

Fln subject: Q9LSG3

Fln msg: your sequence is shorter than subject: 530 - 559

Fln protein: CITTGSLLYRVNTAPYPVQISSTNTPYNNHLLHAYVARTFLALKSDPLKTRLDLLFKQAYDHLSLINAYAAYARRLKLENMKQVRIFTDQARNYTELMNKPEYRALMDTNDMIDEETLRQFEKEVKERIKVTRQLIADAKESFDNQLKIQKLKDTIFAVNDQLTRAKKQGAFASLIAAKSIPKSIHCLSMRLMEERISQPEKYIDKGDPPPQWEDPNLYHYAIFSDNVIAASVVVNSAVKNAKEPWKHVFHVVTDKMNLAAMQVWFKMRSLNGSHVEVKAVEDYKFLNSSYVPVLRQLESANLQRFYFENKLENATKDAPNMKFRNPKYLSMLNHLRFYLPEMYPKLHRILFLDDDVVVQKDLTGLWEIDMEGKVNGAVETCFGSFHRYDKYMNFSHPLIKARFNPKACGWAYGMNFFHLDAWRREKCTEEYHYWQNLNENRTLWKLGTLPPGLITYYKTTKPLDKSWHVLGLGYNPSISMDEIRNAAVVHFNGNMKPWLDIGMNQYRDTWTKYVDYDMEFIQMCNFGH*

Protein Length: 531

Fln nts: AATGTATCACCACTGGATCTCTGCTCTACCGCGTCAACACCGCCCCTTATCCTGTTCAAATCTCCAGCACAAACACTCCCTACAATAATCACCTCCTACACGCCTACGTGGCCCGGACCTTCCTTGCCCTCAAGTCAGATCCGCTGAAAACCCGGTTGGATCTGCTGTTCAAGCAAGCGTATGACCACCTCAGCCTGATCAATGCATATGCTGCGTATGCCCGCAGACTCAAGCTTGAGAACATGAAGCAGGTTCGAATCTTCACAGATCAGGCCAGAAACTACACGGAACTAATGAATAAACCCGAGTATCGGGCTCTAATGGATACTAATGATATGATCGATGAAGAAACCCTTAGGCAATTTGAGAAGGAGGTGAAAGAAAGGATCAAGGTCACACGGCAATTGATTGCTGACGCTAAAGAGTCGTTTGATAACCAGTTGAAGATCCAAAAGCTCAAGGACACAATATTTGCTGTGAACGACCAGTTAACCCGGGCTAAGAAGCAGGGGGCTTTTGCTAGCTTAATTGCAGCTAAGTCCATCCCTAAGAGCATCCATTGCCTGTCTATGAGGTTAATGGAGGAACGGATCTCACAGCCAGAAAAGTATATTGATAAAGGCGACCCTCCGCCACAGTGGGAGGACCCTAACCTCTACCATTATGCCATATTTTCCGACAATGTCATTGCTGCTTCGGTTGTCGTCAATTCTGCAGTTAAGAATGCCAAAGAACCCTGGAAGCATGTATTTCATGTCGTAACCGACAAGATGAATCTTGCCGCAATGCAGGTCTGGTTCAAGATGCGCTCGCTAAATGGATCACATGTTGAGGTTAAAGCTGTTGAGGATTACAAGTTCTTGAATTCTTCCTATGTTCCGGTTTTGCGACAGCTCGAGTCCGCTAACTTGCAAAGGTTTTACTTCGAGAATAAGTTGGAGAATGCAACAAAGGATGCTCCTAATATGAAGTTTAGGAATCCCAAGTATCTTTCCATGTTGAATCATCTGCGCTTTTATTTGCCTGAGATGTATCCAAAGTTACACCGGATCTTGTTTCTAGATGATGATGTTGTTGTTCAGAAGGACCTGACGGGATTATGGGAGATAGATATGGAAGGAAAGGTTAACGGGGCTGTGGAGACATGCTTTGGTTCATTCCATCGTTATGATAAGTATATGAATTTCTCTCATCCTCTGATCAAGGCAAGATTCAATCCCAAGGCTTGTGGTTGGGCTTATGGAATGAATTTCTTCCACTTGGATGCATGGAGAAGGGAGAAGTGTACTGAAGAATATCACTACTGGCAAAACCTGAATGAGAATCGTACATTGTGGAAGCTGGGGACATTACCACCAGGCCTGATCACTTATTATAAAACAACCAAGCCTTTAGATAAATCTTGGCATGTTCTTGGTCTTGGATATAACCCCAGTATTAGTATGGACGAAATCCGCAATGCAGCCGTTGTTCACTTCAATGGAAATATGAAACCATGGCTTGATATTGGCATGAATCAATATCGAGACACCTGGACCAAGTATGTAGACTATGATATGGAGTTTATACAGATGTGCAACTTCGGTCATTGA___AAAAAAATCTCAAGGATTTGGAGTTATTTTATTTAAGCCGGCTAACATGCCTACAATAAGGCATGGTTTTATGTTATGCTTTGTTGCTAATCATATCTCATCAAGTTGCTAAAACATTTTACGGTTTATGTAAGGAGATGTCCGAGAATGTTATAGCTTCCTTTTTAAATTTGTTTAGAGATCTGTTGTGACTTTTGTAATATTTGATTGCGCTGTTGTAAAGTTTCTACTCGTTTAATTGTTATTTGGTTCCTCAATTTATGTTGGTTCATGGGATCATGGACTAAACAGAGAACATATTTCCTTTACTTGGGAATTTATAGAGTACAATAGCAATGCACTCTGGCAGGTAGATTGTGTCATGTCATACCTGGCCAGCTGAGATGTGGCTGAGATGACATT

Fln Alignment:

Contig3951___RTFLALKSDPLKTRLDLLFKQAYDHLSLINAYAAYARRLKLENMKQVRIFTDQARNYTELMNKPEYRALMDTNDM-IDEETLRQFEKEVKERIKVTRQLIADAKESFDNQLKIQKLKDTIFAVNDQLTRAKKQGAFASLIAAKSIPKSIHCLSMRLMEERISQPEKYIDKG-DPPPQWEDPNLYHYAIFSDNVIXXXXXXXXXXXXXXEPWKHVFHVVTDKMNLAAMQVWFKMRSLNGSHVEVKAVEDYKFLNSSYVPVLRQLESANLQRFYFENKLENATKDAPNMKFRNPKYLSMLNHLRFYLPEMYPKLHRILFLDDDVVVQKDLTGLWEIDMEGKVNGAVETCFGSFHRYDKYMNFSHPLIKARFNPKACGWAYGMNFFHLDAWRREKCTEEYHYWQNLNENRTLWKLGTLPPGLITYYKTTKPLDKSWHVLGLGYNPSISMDEIRNAAVVHFNGNMKPWLDIGMNQYRDTWTKYVDYDMEFIQMCNFG
Q9LSG3_________________RSMLDIKSDPLKPRLIQIRKQADDHRSLALAYASYARKLKLENSKLVRIFADLSRNYTDLINKPTYRALYDSDGASIEESVLRQFEKEVKERIKMTRQVIAEAKESFDNQLKIQKLKDTIFAVNEQLTNAKKQGAFSSLIAAKSIPKGLHCLAMRLMEERIAHPEKYTDEGKDRPRELEDPNLYHYAIFSDNVIAASVVVNSAVKNAKEPWKHVFHVVTDKMNLGAMQVMFKLKEYKGAHVEVKAVEDYTFLNSSYVPVLKQLESANLQKFYFENKLENATKDTTNMKFRNPKYLSILNHLRFYLPEMYPKLHRILFLDDDVVVQKDLTGLWEIDMDGKVNGAVETCFGSFHRYAQYMNFSHPLIKEKFNPKACAWAYGMNFFDLDAWRREKCTEEYHYWQNLNENRALWKLGTLPPGLITFYSTTKPLDKSWHVLGLGYNPSISMDEIRNAAVVHFNGNMKPWLDIAMNQFRPLWTKHVDYDLEFVQACNFG

SNPs (tot: 10)

Position	A %	C %	G %	T %	Probability
1509	14			85	0.993533
1512			85	14	0.993533
1623	14			85	0.993533
1624		14		85	0.993533
1668	16			83	0.994512
1669		16		83	0.994512
1672			83	16	0.994512
1690	20			80	0.995493
1694		80		20	0.995493
1802		20	80		0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain