SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
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GOs
ECs
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Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene3907

Length: 342 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene3907
ATTTCTGTTCCATGTTATCCATTTTAGACAGAGTATGGGATCACTTTGTAGCAAGCAAAGGCCTGCAGCTGAAGAAGATTCTGAAGAACGTCAGGCTGAAGAAATAGATAGAAGAATTGCTCAAGAAGCAAGGGCAGAGAAGGATGTCCAAAAGCTATTATTACTTGGTGCTGGAGAGTCTGGAAAGTCTACAATTTTTAAACAAATAAAGCTTTTGTTTCAAACAGGCTTTGATGAAGCGGAGCGAGGGAACTACATATCAGTGATCCACGCAAACGCCTATCAGTCAATTAAAATATTATATGATGGTTCAAAGGAACTTGCTGAAAGTGAAGGAACATT

Ace file of the UniGene biog3_v1.0_unigene3907 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene20410	7/7

Source	Descriptions	Term	Type	Identity
AutoFact	Guanine nucleotide-binding protein alpha-1 subunit n=11 Tax=rosids RepID=GPA1_LOTJA	-	-	75%
FL-Next	sp=Guanine nucleotide-binding protein alpha-1 subunit; Solanum tuberosum (Potato).	-	-	69%
Blast2go	g protein alpha subunit	-	-	85%

Source	InterPros	Term	Type	Identity
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-
Sma3	Guanine nucleotide binding protein (G-protein), alpha subunit	IPR001019	-	-
Sma3	Plant G-protein, alpha subunit	IPR002976	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: sp_plants

Fln subject: P93564

Fln msg: Distance to subject end: 280 aas, your sequence is shorter than subject: 102 - 384

Fln protein: MGSLCSKQRPAAEEDSEERQAEEIDRRIAQEARAEKDVQKLLLLGAGESGKSTIFKQIKLLFQTGFDEAERGNYISVIHANAYQSIKILYDGSKELAESEGT

Protein Length: 103

Fln nts: ATTTCTGTTCCATGTTATCCATTTTAGACAGAGT_-_ATGGGATCACTTTGTAGCAAGCAAAGGCCTGCAGCTGAAGAAGATTCTGAAGAACGTCAGGCTGAAGAAATAGATAGAAGAATTGCTCAAGAAGCAAGGGCAGAGAAGGATGTCCAAAAGCTATTATTACTTGGTGCTGGAGAGTCTGGAAAGTCTACAATTTTTAAACAAATAAAGCTTTTGTTTCAAACAGGCTTTGATGAAGCGGAGCGAGGGAACTACATATCAGTGATCCACGCAAACGCCTATCAGTCAATTAAAATATTATATGATGGTTCAAAGGAACTTGCTGAAAGTGAAGGAACATT

Fln Alignment:

Contig3907___MGSLCSKQRPXXXXXXXXXXXXE-IDRRIAQEARAEKDVQKLLLLGAGESGKSTIFKQIKLLFQTGFDEAERGNYISVIHANAYQSIKILYDGSKELAESE
P93564_________________MGSLCSRNKHYSQADDEENTQTAEIERRIEQETKADKHIQKLLLLGAGDSGKSTIFKQIKLLFQTGFDEAELKNYIPVIHANVYQTIKILHDGSKELAQNE

SNPs (tot: 3)

Position	A %	C %	T %	Probability
17	33	66		0.997452
21		66	33	0.997452
242	20		80	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain