SustainPineDB

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Assembly info
Unigenes
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ECs
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Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene3900

Length: 567 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene3900
TGCAGCTGAGGCTGACCAAACACTTCTCCCTGTTTTAGCAGTTCATGGATTTATGATGTTCTTGGCATGGGGAATTATGCTTTCCTGGAGGAGTATTGGCAGCAAGATATTTGAAACACATAAAAGGAGATGGCTGGTTTCAGATCCATGTATATTTGCAATATTCTGGTATATCTGTGATGCTACTTGGATTGCTTTTTGCTGCAGCTGAACTAAGAGGATTTCACATAGAATCTCTGCATGTGAAGTTTGGTGTGGCAGCTATATTTTTTGCATGTTGGCAGCCAGTCAATGCTTACTTGCGCCCCAAGAAAACTGCTGCAGGGGAGCAACCTTCCTCAAAAAGGATCATGTGGGAGTACCTCCATGTAGCTACTGGAAGAAGTGCACTTGTGATTGGGATTATAGCTCTTATAAGTGGAATGAGACAACTTGGAGACAGATATGGTGGCGAGGATGTGAGAGGACTTAACTGGGCTCTAGTTCTGTGGTTTGTAGTTGGTGCTGTGACTGTGGGTTACTTAGAGTACCGGCAGTCTAAAAGAGGAAAGAAAATTAGAATACATT

Ace file of the UniGene biog3_v1.0_unigene3900 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene15067	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	DOMON and dopamine beta-monooxygenase N-terminal domain-containing protein [Arabidopsis thaliana] dbj\|BAB08762.1\| unnamed protein product [Arabidopsis thaliana] gb\|AAL90897.1\| AT5g54830/MBG8_9 [Arabidopsis thaliana] gb\|AAO11544.1\| At5g54830/MBG8_9 [Arabid	-	-	61%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	71%
Blast2go	dopamine beta-	-	-	76%

Source	InterPros	Term	Type	Identity
Sma3	DOMON domain	IPR005018	-	-
Sma3	Cytochrome b561/ferric reductase transmembrane	IPR006593	-	-
Sma3		IPR013050	-	-

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: tr_plants

Fln subject: F6H3I9

Fln msg: Unexpected stop codon in the beginning of your sequence, STOP codon was not found. Distance to subject end: 8 aas, your sequence is shorter than subject: 188 - 872

Fln protein: QLRLTKHFSLF*QFMDL*CSWHGELCFPGGVLAARYLKHIKGDGWFQIHVYLQYSGISVMLLGLLFAAAELRGFHIESLHVKFGVAAIFFACWQPVNAYLRPKKTAAGEQPSSKRIMWEYLHVATGRSALVIGIIALISGMRQLGDRYGGEDVRGLNWALVLWFVVGAVTVGYLEYRQSKRGKKIRIH

Protein Length: 189

Fln nts: TGCAGCTGAGGCTGACCAAACACTTCTCCCTGTTTTAGCAGTTCATGGATTTATGATGTTCTTGGCATGGGGAATTATGCTTTCCTGGAGGAGTATTGGCAGCAAGATATTTGAAACACATAAAAGGAGATGGCTGGTTTCAGATCCATGTATATTTGCAATATTCTGGTATATCTGTGATGCTACTTGGATTGCTTTTTGCTGCAGCTGAACTAAGAGGATTTCACATAGAATCTCTGCATGTGAAGTTTGGTGTGGCAGCTATATTTTTTGCATGTTGGCAGCCAGTCAATGCTTACTTGCGCCCCAAGAAAACTGCTGCAGGGGAGCAACCTTCCTCAAAAAGGATCATGTGGGAGTACCTCCATGTAGCTACTGGAAGAAGTGCACTTGTGATTGGGATTATAGCTCTTATAAGTGGAATGAGACAACTTGGAGACAGATATGGTGGCGAGGATGTGAGAGGACTTAACTGGGCTCTAGTTCTGTGGTTTGTAGTTGGTGCTGTGACTGTGGGTTACTTAGAGTACCGGCAGTCTAAAAGAGGAAAGAAAATTAGAATACATT

Fln Alignment:

Contig3900___LCFPGGVLAARYLKHIKGDGWFQIHVYLQYSGISVMLLGLLFAAAELRGFHIESLHVKFGVAAIFFACWQPVNAYLRPKKTAAGEQPSSKRIMWEYLHVATGRSALVIGIIALISGMRQLGDRYGGEDVRGLNWALVLWFVVGAVTVGYLEYRQSKRGK
F6H3I9_________________ILLPGGILAARYLKHVKGDGWFQIHVYLQYSGLAIVLLGFLFAVAELRGFYFSSLHVKFGITAIFLACVQPVNASLRPKRSANGETVSSKRLAWEYLHVIVGRCAIVAGIAALISGMKHLGDRYGGENVEGLNWALIIWFLLGALTVVYLEYREKKREK

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain