SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene3877

Length: 844 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog3_v1.0_unigene3877 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene15990	18/18

Source	Descriptions	Term	Type	Identity
AutoFact	ssDNA-binding transcriptional regulator [Arabidopsis thaliana] gb\|AAF43941.1\|AC012188_18 Contains similarity to a hypothetical protein from Arabidopsis thaliana gb\|AC002521.2. EST gb\|AI995686 comes from this gene gb\|AAG48815.1\|AF332452_1 putative DNA-bind	-	-	48%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	81%
Blast2go	ssdna-binding transcriptional regulator	-	-	68%

Source	GOs	Term	Type	Identity
Blast2go	negative regulation of telomere maintenance via telomerase	GO:0032211	Biological Process	68%
Blast2go	telomeric DNA binding	GO:0042162	Molecular Function	68%
Blast2go	plastid chromosome	GO:0009508	Cellular Component	68%
Blast2go	chloroplast	GO:0009507	Cellular Component	68%
Blast2go	nucleus	GO:0005634	Cellular Component	68%

Source	InterPros	Term	Type	e value	Identity
Sma3	Plant transcription factor	IPR013742	-	0.0	-
Sma3	ssDNA-binding transcriptional regulator	IPR009044	-	0.0	-

Full-Lengther Next Prediction

SNPs (tot: 14)

Position	A %	C %	G %	T %	Probability
136	33			66	0.997452
137	66			33	0.997452
138	66		33		0.997452
139		66		33	0.997452
238		80	20		0.995493
239		80		20	0.995493
241			60	40	1.0
549	10		90		0.90298
550	10			90	0.90298
651	44	55			1.0
677		88		11	0.923564
749		80		20	0.995493
778	66	33			0.997452
780		66		33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain