SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene3870

Length: 298 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene3870
AATGTGTATTTTTTGAGGAAACTTGTTTAGCTTCACGCCCTGCGATGCCATTTGAACCATTGAAGAAGAGACTACTTGCACGCCTAAAAACGTTGGGAGTACAGATTTCACATTTATATGAGGAGGAATGGTCTTATATTCCTGTTGGTGGGTCATTGCCAAACACAAGACAAAAGCATTTAGGTTTTGGTGCTGCAGCAAGCATGGTTCACCCAGCCACTGGCTATTCTGTTGTCCGCTCTTTGTCAGAGGCTCCATCATATGCAGCAGCTATTGCAAGTTGTCTGAAGGATACATT

Ace file of the UniGene biog3_v1.0_unigene3870 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene10574	4/4

Source	Descriptions	Term	Type	Identity
AutoFact	Putative lycopene epsilon cyclase n=1 Tax=Daucus carota subsp. sativus RepID=Q2VEX5_DAUCA	-	-	62%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	97%
Blast2go	lycopene epsilon cyclase	-	-	81%

Source	GOs	Term	Type	e value	Identity
Blast2go	carotenoid biosynthetic process	GO:0016117	Biological Process	0.0	81%
Blast2go	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	GO:0016705	Molecular Function	0.0	81%

Source	InterPros	Term	Type	Identity
Sma3	Chlorophyll A-B binding protein, plant	IPR001344	-	-
Sma3	Lycopene cyclase-type, FAD-binding	IPR008671	-	-
Sma3	Lycopene cyclase, beta/epsilon	IPR010108	-	-
Sma3	FAD-dependent pyridine nucleotide-disulphide oxidoreductase	IPR013027	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NVU1

Fln msg: Distance to subject end: 63 aas, your sequence is shorter than subject: 98 - 512

Fln protein: CVFFEETCLASRPAMPFEPLKKRLLARLKTLGVQISHLYEEEWSYIPVGGSLPNTRQKHLGFGAAASMVHPATGYSVVRSLSEAPSYAAAIASCLKDT

Protein Length: 99

Fln nts: AATGTGTATTTTTTGAGGAAACTTGTTTAGCTTCACGCCCTGCGATGCCATTTGAACCATTGAAGAAGAGACTACTTGCACGCCTAAAAACGTTGGGAGTACAGATTTCACATTTATATGAGGAGGAATGGTCTTATATTCCTGTTGGTGGGTCATTGCCAAACACAAGACAAAAGCATTTAGGTTTTGGTGCTGCAGCAAGCATGGTTCACCCAGCCACTGGCTATTCTGTTGTCCGCTCTTTGTCAGAGGCTCCATCATATGCAGCAGCTATTGCAAGTTGTCTGAAGGATACATT

Fln Alignment:

Contig3870___VFFEETCLASRPAMPFEPXXXXXXXXXXXLGVQISHLYEEEWSYIPVGGSLPNTRQKHLGFGAAASMVHPATGYSVVRSLSEAPSYAAAIASCLKD
A9NVU1_________________VFFEETCLASRPAMPFEPLKKRLLARLKRLGVQISHLYEEEWSYIPVGGSLPNTRQKHLGFGAAASMVHPATGYSVVRSLSEAPSYAAAIASALKD

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
242		25	75		0.996473
243	25		75		0.996473

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain