SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene3845

Length: 555 nt

UniGene Fasta

>biog3_v1.0_unigene3845
TGGACCTTGCAATTCGTTTGAGACCTTTCGGTGTTAAAATTCTTGCTACTAGACGACGTTGGCACTCAAAATCAGCTTTGGATTTGAGCAAACAAGATGCTGTTGATAATTATCCAATGCAAAGCATAGACAATGGAAACATCAAGGATGACCTGATTGATGAGAAAGGTGGAAATGAGTGCCTTTACGAATTTGCAAAGCAAGCGGACATAGTAGTTATTTGTGCCACATTGACTTCAGAGACTGTTGGCATGGTGAATGCAAAGTTTCTATCTTCAATGAAAAAGGGTGCATTTCTTGTCAATGTTGCTCGAGGAGGTCTCTTGGATTACGAAGCAGTCAAAGCTTCTCTGGAATGTGGTCACTTGGGAGGCTTGGGTACTGATGTTGCTTGGTTCGAACCATTTGATCCTGCAGATCCTATTATACAACATCCGAAAGTCTTGATAACACCTCATGTTGCCGGAGTTACAGAAGTTTCTTATAGAAACATGGCCAAGGTAATAGGTGATTGTGCTCTTCACCTTAATAATGGTGAATCCTTTATTGGCATAG

Ace file of the UniGene biog3_v1.0_unigene3845

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene325	7/7

Source	Descriptions	Term	Type	Identity
AutoFact	phosphoglycerate dehydrogenase-like protein [Oryza sativa Japonica Group] dbj\|BAD30579.1\| phosphoglycerate dehydrogenase-like protein [Oryza sativa Japonica Group]	-	-	56%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	84%
Blast2go	protein	-	-	74%

Source	ECs	Term	Type	e value	Identity
Blast2go	Oxidoreductases, Acting on the CH-OH group of donors, With NAD(+) or NADP(+) as acceptor.	EC:1.1.1.-	-	0.0	74%

Source	KEGGs	Term	Identity
Blast2go	Fructose and mannose metabolism	00051	74%
Blast2go	Ascorbate and aldarate metabolism	00053	74%
Blast2go	Steroid hormone biosynthesis	00140	74%
Blast2go	Tetracycline biosynthesis	00253	74%
Blast2go	Glycine, serine and threonine metabolism	00260	74%
Blast2go	Benzoate degradation	00362	74%
Blast2go	Bisphenol degradation	00363	74%
Blast2go	Amino sugar and nucleotide sugar metabolism	00520	74%
Blast2go	Polyketide sugar unit biosynthesis	00523	74%
Blast2go	Linoleic acid metabolism	00591	74%
Blast2go	Xylene degradation	00622	74%
Blast2go	Chloroalkane and chloroalkene degradation	00625	74%
Blast2go	Nitrotoluene degradation	00633	74%
Blast2go	Butanoate metabolism	00650	74%
Blast2go	Carbon fixation pathways in prokaryotes	00720	74%
Blast2go	Retinol metabolism	00830	74%
Blast2go	Isoquinoline alkaloid biosynthesis	00950	74%
Blast2go	Glucosinolate biosynthesis	00966	74%
Blast2go	Insect hormone biosynthesis	00981	74%
Blast2go	Biosynthesis of unsaturated fatty acids	01040	74%
Blast2go	Biosynthesis of type II polyketide backbone	01056	74%
Blast2go	Biosynthesis of type II polyketide products	01057	74%
Blast2go	Biosynthesis of alkaloids derived from shikimate pathway	01063	74%
Blast2go	Metabolic pathways	01100	74%
Blast2go	Biosynthesis of secondary metabolites	01110	74%

Source	GOs	Term	Type	Identity
Blast2go	metabolic process	GO:0008152	Biological Process	74%
Blast2go	NAD binding	GO:0051287	Molecular Function	74%
Blast2go	oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor	GO:0016616	Molecular Function	74%
Blast2go	mitochondrion	GO:0005739	Cellular Component	74%
Blast2go	plastid	GO:0009536	Cellular Component	74%

Source	InterPros	Term	Type	Identity
Sma3	D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain	IPR006139	-	-
Sma3	D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding	IPR006140	-	-
Sma3	NAD(P)-binding domain	IPR016040	-	-

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LRC1

Fln msg: STOP codon was not found. Distance to subject end: 4 aas, your sequence is shorter than subject: 184 - 355

Fln protein: DLAIRLRPFGVKILATRRRWHSKSALDLSKQDAVDNYPMQSIDNGNIKDDLIDEKGGNECLYEFAKQADIVVICATLTSETVGMVNAKFLSSMKKGAFLVNVARGGLLDYEAVKASLECGHLGGLGTDVAWFEPFDPADPIIQHPKVLITPHVAGVTEVSYRNMAKVIGDCALHLNNGESFIGI

Protein Length: 185

Fln nts: TGGACCTTGCAATTCGTTTGAGACCTTTCGGTGTTAAAATTCTTGCTACTAGACGACGTTGGCACTCAAAATCAGCTTTGGATTTGAGCAAACAAGATGCTGTTGATAATTATCCAATGCAAAGCATAGACAATGGAAACATCAAGGATGACCTGATTGATGAGAAAGGTGGAAATGAGTGCCTTTACGAATTTGCAAAGCAAGCGGACATAGTAGTTATTTGTGCCACATTGACTTCAGAGACTGTTGGCATGGTGAATGCAAAGTTTCTATCTTCAATGAAAAAGGGTGCATTTCTTGTCAATGTTGCTCGAGGAGGTCTCTTGGATTACGAAGCAGTCAAAGCTTCTCTGGAATGTGGTCACTTGGGAGGCTTGGGTACTGATGTTGCTTGGTTCGAACCATTTGATCCTGCAGATCCTATTATACAACATCCGAAAGTCTTGATAACACCTCATGTTGCCGGAGTTACAGAAGTTTCTTATAGAAACATGGCCAAGGTAATAGGTGATTGTGCTCTTCACCTTAATAATGGTGAATCCTTTATTGGCATAG

Fln Alignment:

Contig3845___DLAIRLRPFGVKILATRRRWHSKSALDLSKQDAVDNYPMQSIDNGNIKDDLIDEKGGNECLYEFAKQADIVVICATLTSETVGMVNAKFLSSMKKGAFLVNVARGGLLDYEAVKASLECGHLGGLGTDVAWFEPFDPADPIIQHPKVLITPHVAGVTEVSYRNMAKVIGDCALHLNNGESFIGI
B8LRC1_________________DLAVRLRPFGVKILATRRCWHSKSTVDLNKQDAVYTYPTQSTGDGNIKDDLIDEKGGNECLYDFASRADIVVTCATMTSETVGMVNAKFLSLMKKGAFLVNVARGGLLDYEAVKASLESGHLGGLGADVAWFEPFDPADPILQHPKVFITPHVAGVTEFSYRNMAKIIGDCALHLHNGDSLVGV

SNPs (tot: 3)

Position	A %	C %	G %	T %	Probability
213	33		66		0.997452
544	33			66	0.997452
545		33		66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain