SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene3840

Length: 945 nt

UniGene Fasta

Ace file of the UniGene biog3_v1.0_unigene3840

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene2450	12/12

Source	Descriptions	Term	Type	Identity
AutoFact	Serine carboxypeptidase, putative n=1 Tax=Ricinus communis RepID=B9RM66_RICCO	-	-	40%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	40%
Blast2go	serine carboxypeptidase	-	-	56%

Source	GOs	Term	Type	e value	Identity
Blast2go	catalytic activity	GO:0003824	Molecular Function	0.0	56%

Source	InterPros	Term	Type	e value	Identity
Sma3	Peptidase S10, serine carboxypeptidase	IPR001563	-	0.0	-
Sma3	Peptidase S10, serine carboxypeptidase, active site	IPR018202	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LQ79

Fln msg: Distance to subject end: 105 aas, your sequence is shorter than subject: 315 - 494

Fln protein: NVNKKHLYYYFATSES*TRPRIQLFFGSMVAPVALVLNAVLYLFGPFKFNTSNGDDASFPKLQLNPHSWTKVSSIIFVDSPVGTGFSYADTSDAYKMDDEKTTFDAYAFLLKWFDEYPEFLLNPFYVAGSSYGGVYVPTVAEEIVNGIEAGVKPILNFKGYTVGNGLTNSDLHLNSRIPFAYGMGLIPKELYDNLKDTCNGDYQNQKNSDCLSNLEAYRQAIDGLNYYHILFLPCHFEMRIEEVVPATSLDAYNSLCDVGGCHLSPLYSHKDVYCHDYNERPRILLNSQDALESIHAQPEHTSGKWLRCKDLEYK

Protein Length: 316

Fln nts: AATGTAAACAAGAAGCATCTCTACTATTACTTTGCTACTTCAGAGAGTTAAACCCGGCCACGGATCCAGTTGTTCTTTGGCTCAATGGTGGCCCCGGTTGCTCTGGTTTTGAATGCGGTTCTCTACCTTTTTGGGCCCTTCAAGTTTAACACAAGCAATGGCGATGATGCAAGTTTCCCAAAGTTACAATTAAATCCACATTCTTGGACTAAGGTTTCCAGCATCATATTCGTGGATTCACCTGTTGGAACTGGATTTTCATACGCTGATACGTCAGATGCCTATAAAATGGATGATGAGAAGACAACATTTGATGCATATGCCTTCCTACTAAAGTGGTTTGATGAGTACCCAGAATTCCTACTGAATCCATTCTATGTGGCGGGCAGTTCATATGGGGGTGTTTATGTACCCACTGTAGCAGAGGAAATAGTGAATGGTATTGAGGCTGGTGTAAAACCTATTTTGAATTTCAAGGGCTACACAGTGGGAAATGGTCTGACGAACAGTGATTTACATTTGAATTCAAGGATTCCATTTGCTTATGGCATGGGACTTATACCAAAAGAACTCTATGATAATTTAAAGGATACTTGCAATGGAGATTATCAGAATCAAAAGAATTCTGACTGTTTGTCCAATTTGGAAGCTTACCGACAAGCTATTGATGGACTCAACTACTATCATATTCTTTTCCTACCTTGTCACTTTGAAATGAGAATAGAAGAAGTTGTGCCTGCAACTTCCTTGGATGCTTACAACTCATTATGTGATGTAGGTGGCTGCCACCTTTCACCATTATACAGCCACAAAGATGTCTATTGCCATGACTATAATGAGCGTCCACGAATTTTATTAAATTCTCAAGATGCATTAGAATCTATTCATGCACAACCGGAACATACATCGGGGAAGTGGTTGAGGTGTAAAGATCTAGAATACAAA

Fln Alignment:

Contig3840___KHLYYYFATSES*TRPRIQLFFGSMXXXXXXXXXXXXXXFGPFKFNTSNGDDASFPKLQLNPHSWTKVSSIIFVDSPVGTGFSYADTSDAYKMDDEKTTFDAYAFLLKWFDEYPEFLLNPFYVAGSSYGGVYVPTVAEEIVNGIEAGVKPILNFKGYTVGNGLTNSDLHLNSRIPFAYGMGLIPKELYDNLKDTCNGDYQNQKNSDCLSNLEAYRQAIDGLNYYHILFLPCHFEMRIEEVVPATSL--DAYNSL-----------------------CDVGGCHLSPLYSH----KDVYCHDYNERPRILLNSQDALESIHAQPEHTSGKWLRCKD
B8LQ79_________________KKLFYYFATSQG-NPAEDPLVLWLNGGPGCSSLDGFIYEHGPFNFRRGD-QPGSKPVIELNPFSWTKISSIIYLESPAGVGYSYSDTENDYITGDLSTASDNYKFLLQWFEEYPEFVHNPFFIAGESYAGVYVPTLAQQVVNGIEVGVEPSLNFKGYLVGNGVTDVNYDGNAIVPFVHGMGLISESLYEEVKQACNGNYWNATSSLCQSKLGAVHQAVSKLNTYDIL-EPCYHSPDIQEVVTIQEKLPESFKSLGVTDRPFPVRRRMFGRAWPMWSAVKDGKVPMWPQLGDQLGAQHLICMD-TQVSHVWCNDPLVREAIHAESENISGRWQVCAD

SNPs (tot: 10)

Position	A %	C %	G %	T %	Probability
668	50			50	1.0
732			83	16	0.994512
733	83			16	0.994512
758	16			83	0.994512
759		16	83		0.994512
760	16	83			0.994512
787	20		80		0.995493
791			80	20	0.995493
818	75			25	0.996473
819	75			25	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain